Literature DB >> 2020541

A sequence dimorphism in a conserved domain of human 28S rRNA. Uneven distribution of variant genes among individuals. Differential expression in HeLa cells.

L H Qu1, M Nicoloso, J P Bachellerie.   

Abstract

In humans, cellular 28S rRNA displays a sequence dimorphism within an evolutionarily conserved motif, with the presence, at position +60, of either a A (like the metazoan consensus) or a G. The relative abundance of the two forms of variant genes in the genome exhibit large differences among individuals. The two variant forms are generally represented in cellular 28S rRNA in proportion of their relative abundance in the genome, at least for leucocytes. However, in some cases, one form of variant may be markedly underexpressed as compared to the other. Thus, in HeLa cells, A-form genes contribute to only 1% of the cellular content in mature 28S rRNA although amounting to 15% of the ribosomal genes. The differential expression seems to result from different transcriptional activities rather than from differences in pre-rRNA processing efficiency or in stabilities of mature rRNAs. G-form ribosomal genes were not detected in other mammals, including chimpanzee, which suggests that the fixation of this variant type is a rather recent event in primate evolution.

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Year:  1991        PMID: 2020541      PMCID: PMC333774          DOI: 10.1093/nar/19.5.1015

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

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Authors:  I L Gonzalez; C Chambers; J L Gorski; D Stambolian; R D Schmickel; J E Sylvester
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Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

6.  The primary and secondary structure of yeast 26S rRNA.

Authors:  G M Veldman; J Klootwijk; V C de Regt; R J Planta; C Branlant; A Krol; J P Ebel
Journal:  Nucleic Acids Res       Date:  1981-12-21       Impact factor: 16.971

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Authors:  M LeMeur; N Glanville; J L Mandel; P Gerlinger; R Palmiter; P Chambon
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8.  Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence.

Authors:  M Salim; B E Maden
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9.  Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes.

Authors:  N Arnheim; M Krystal; R Schmickel; G Wilson; O Ryder; E Zimmer
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  3 in total

1.  New nucleotide sequence data on the EMBL File Server.

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Journal:  Nucleic Acids Res       Date:  1991-06-25       Impact factor: 16.971

2.  The sequence of 28S ribosomal RNA varies within and between human cell lines.

Authors:  H Leffers; A H Andersen
Journal:  Nucleic Acids Res       Date:  1993-03-25       Impact factor: 16.971

3.  An intergenic non-coding rRNA correlated with expression of the rRNA and frequency of an rRNA single nucleotide polymorphism in lung cancer cells.

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Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

  3 in total

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