Literature DB >> 20203406

Two solid phases of pyrimidin-1-ium hydrogen chloranilate monohydrate determined at 225 and 120 K.

Kazuma Gotoh1, Tetsuo Asaji, Hiroyuki Ishida.   

Abstract

The crystal structures of two solid phases of the title compound, C(4)H(5)N(2)(+) x C(6)HCl(2)O(4)(-) x H(2)O, have been determined at 225 and 120 K. In the high-temperature phase, stable above 198 K, the transition temperature of which has been determined by (35)Cl nuclear quadrupole resonance and differential thermal analysis measurements, the three components are held together by O-H...O, N...H...O, C-H...O and C-H...Cl hydrogen bonds, forming a centrosymmetric 2+2+2 aggregate. In the N...H...O hydrogen bond formed between the pyrimidin-1-ium cation and the water molecule, the H atom is disordered over two positions, resulting in two states, viz. pyrimidin-1-ium-water and pyrimidine-oxonium. In the low-temperature phase, the title compound crystallizes in the same monoclinic space group and has a similar molecular packing, but the 2+2+2 aggregate loses the centrosymmetry, resulting in a doubling of the unit cell and two crystallographically independent molecules for each component in the asymmetric unit. The H atom in one N...H...O hydrogen bond between the pyrimidin-1-ium cation and the water molecule is disordered, while the H atom in the other hydrogen bond is found to be ordered at the N-atom site with a long N-H distance [1.10 (3) A].

Entities:  

Year:  2010        PMID: 20203406      PMCID: PMC2855571          DOI: 10.1107/S010827011000363X

Source DB:  PubMed          Journal:  Acta Crystallogr C        ISSN: 0108-2701            Impact factor:   1.172


  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogen bonding in 1,2-diazine-chloranilic acid (2/1) and 1,4-diazine-chloranilic acid (2/1) determined at 110 K.

Authors:  Kazuma Gotoh; Tetsuo Asaji; Hiroyuki Ishida
Journal:  Acta Crystallogr C       Date:  2008-09-20       Impact factor: 1.172

3.  1,2-Diazinium hydrogen chloranilate.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11

4.  Hydrogen bonding in 1,2-diazine-chloranilic acid (2 : 1) studied by a 14N nuclear quadrupole coupling tensor and multi-temperature X-ray diffraction.

Authors:  Janez Seliger; Veselko Zagar; Kazuma Gotoh; Hiroyuki Ishida; Akiko Konnai; Daiki Amino; Tetsuo Asaji
Journal:  Phys Chem Chem Phys       Date:  2009-02-09       Impact factor: 3.676

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structures of three hydrogen-bonded 1:2 compounds of chloranilic acid with 2-pyridone, 3-hy-droxy-pyridine and 4-hyroxypyridine.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-29
  1 in total

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