Literature DB >> 20200597

On the expectation and variance of the reversal distance.

László A Székely1, Yiting Yang.   

Abstract

We give a pair of well-matched lower and upper bounds for the expectation of reversal distance under the hypothesis of random gene order by investigating the expected number of cycles in the breakpoint graph of linear signed permutations. Sankoff and Haque [9] proved similar results for circular signed permutations based on approximations based on a slightly different model; while our approach is discrete. We also provide an near-tight upper bound for the variance of reversal distance, which gives information on the distribution of reversal distance.

Entities:  

Year:  2009        PMID: 20200597      PMCID: PMC2830668     

Source DB:  PubMed          Journal:  Acta Univ Sapientiae Matem        ISSN: 1844-6094


  2 in total

1.  The distribution of genomic distance between random genomes.

Authors:  David Sankoff; Lani Haque
Journal:  J Comput Biol       Date:  2006-06       Impact factor: 1.479

2.  Intraspecific variation and multicircularity in Brassica mitochondrial DNAs.

Authors:  J D Palmer
Journal:  Genetics       Date:  1988-02       Impact factor: 4.562

  2 in total
  2 in total

1.  Listing all sorting reversals in quadratic time.

Authors:  Krister M Swenson; Ghada Badr; David Sankoff
Journal:  Algorithms Mol Biol       Date:  2011-04-19       Impact factor: 1.405

2.  Phase change for the accuracy of the median value in estimating divergence time.

Authors:  Arash Jamshidpey; David Sankoff
Journal:  BMC Bioinformatics       Date:  2013-10-15       Impact factor: 3.169

  2 in total

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