Literature DB >> 20200287

MST (molecular serotyping tool): a program for computer-assisted molecular identification of Escherichia coli and Shigella O antigens.

Roney S Coimbra1, François Artiguenave, Leandro S R Z Jacques, Guilherme C Oliveira.   

Abstract

Escherichia coli and Shigella O antigens can be inferred using the rfb-restriction fragment length polymorphism (RFLP) molecular test. We present herein a dynamic programming algorithm-based software to compare the rfb-RFLP patterns of clinical isolates with those in a database containing the 171 previously published patterns corresponding to all known E. coli/Shigella O antigens.

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Year:  2010        PMID： 20200287      PMCID： PMC2863929          DOI： 10.1128/JCM.00357-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  7 in total

1.  Molecular and phenotypic characterization of potentially new Shigella dysenteriae serotype.

Authors:  R S Coimbra; P Lenormand; F Grimont; P Bouvet; S Matsushita; P A Grimont
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

2.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

3.  Identification of Shigella serotypes by restriction of amplified O-antigen gene cluster.

Authors:  R S Coimbra; F Grimont; P A Grimont
Journal:  Res Microbiol       Date:  1999-10       Impact factor: 3.992

4.  O148 Shiga toxin-producing Escherichia coli outbreak: microbiological investigation as a useful complement to epidemiological investigation.

Authors:  E Espié; F Grimont; V Vaillant; M P Montet; I Carle; C Bavai; H de Valk; C Vernozy-Rozand
Journal:  Clin Microbiol Infect       Date:  2006-10       Impact factor: 8.067

5.  Identification of Escherichia coli O-serogroups by restriction of the amplified O-antigen gene cluster (rfb-RFLP).

Authors:  R S Coimbra; F Grimont; P Lenormand; P Burguière; L Beutin; P A Grimont
Journal:  Res Microbiol       Date:  2000-10       Impact factor: 3.992

6.  A novel Shigella dysenteriae serovar isolated in Canada.

Authors:  P L Melito; D L Woodward; J Munro; J Walsh; R Foster; P Tilley; A Paccagnella; J Isaac-Renton; J Ismail; L K Ng
Journal:  J Clin Microbiol       Date:  2005-02       Impact factor: 5.948

7.  Identification of a group of shigella-like isolates as Shigella boydii 20.

Authors:  Francine Grimont; Monique Lejay-Collin; Kaisar A Talukder; Isabelle Carle; Sylvie Issenhuth; Karine Le Roux; Patrick A D Grimont
Journal:  J Med Microbiol       Date:  2007-06       Impact factor: 2.472
  7 in total
  5 in total

Review 1.  Recent advances in understanding enteric pathogenic Escherichia coli.

Authors:  Matthew A Croxen; Robyn J Law; Roland Scholz; Kristie M Keeney; Marta Wlodarska; B Brett Finlay
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

2.  Revisiting molecular serotyping of Streptococcus pneumoniae.

Authors:  Dhian R A Camargo; Fabiano S Pais; Ângela C Volpini; Marluce A A Oliveira; Roney S Coimbra
Journal:  BMC Genomics       Date:  2015-05-26       Impact factor: 3.969

3.  Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil.

Authors:  Marisa F Nicolás; Pablo Ivan Pereira Ramos; Fabíola Marques de Carvalho; Dhian R A Camargo; Carlene de Fátima Morais Alves; Guilherme Loss de Morais; Luiz G P Almeida; Rangel C Souza; Luciane P Ciapina; Ana C P Vicente; Roney S Coimbra; Ana T Ribeiro de Vasconcelos
Journal:  Front Microbiol       Date:  2018-02-16       Impact factor: 5.640

4.  Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil.

Authors:  Pablo Ivan Pereira Ramos; Renata Cristina Picão; Eliana Carolina Vespero; Marsileni Pelisson; Luiz Fernando Goda Zuleta; Luiz Gonzaga P Almeida; Alexandra L Gerber; Ana Tereza R Vasconcelos; Ana Cristina Gales; Marisa Fabiana Nicolás
Journal:  BMC Microbiol       Date:  2012-08-11       Impact factor: 3.605

Review 5.  Historical, current, and emerging tools for identification and serotyping of Shigella.

Authors:  Fatima Bachir Halimeh; Rayane Rafei; Marwan Osman; Issmat I Kassem; Seydina M Diene; Fouad Dabboussi; Jean-Marc Rolain; Monzer Hamze
Journal:  Braz J Microbiol       Date:  2021-09-15       Impact factor: 2.476
  5 in total

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