Literature DB >> 20199841

Protein kinetic stability.

Jose M Sanchez-Ruiz1.   

Abstract

The relevance of protein stability for biological function and molecular evolution is widely recognized. Protein stability, however, comes in two flavours: thermodynamic stability, which is related to a low amount of unfolded and partially-unfolded states in equilibrium with the native, functional protein; kinetic stability, which is related to a high free-energy barrier "separating" the native state from the non-functional forms (unfolded states, irreversibly-denatured protein). Such barrier may guarantee that the biological function of the protein is maintained, at least during a physiologically relevant time-scale, even if the native state is not thermodynamically stable with respect to non-functional forms. Kinetic stabilization is likely required in many cases, since proteins often work under conditions (harsh extracellular or crowded intracellular environments) in which deleterious alterations (proteolysis, aggregation, undesirable interactions with other macromolecular components) are prone to occur. Also, kinetic stability may provide a mechanism for the evolution of optimal functional properties. Furthermore, enhancement of kinetic stability is essential for many biotechnological applications of proteins. Despite all this, many published studies focus on thermodynamic stability, partly because it can be easily quantified in vitro for small model proteins and, also, because of the availability of computational algorithms to estimate mutation effects on thermodynamic stability. In this review, the opposite bias is purposely adopted: the experimental evidence supporting widespread kinetic stabilization of proteins is summarized, the role of natural selection in determining this feature is discussed, possible molecular mechanisms responsible for kinetic stability are described and the relation between kinetic destabilization and protein misfolding diseases is highlighted.

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Year:  2010        PMID: 20199841     DOI: 10.1016/j.bpc.2010.02.004

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  93 in total

1.  Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: factors contributing to increased activity retention.

Authors:  Wojciech Augustyniak; Agnieszka A Brzezinska; Tjaard Pijning; Hans Wienk; Rolf Boelens; Bauke W Dijkstra; Manfred T Reetz
Journal:  Protein Sci       Date:  2012-02-29       Impact factor: 6.725

2.  Inflammation protein SAA2.2 spontaneously forms marginally stable amyloid fibrils at physiological temperature.

Authors:  Zhuqiu Ye; Diane Bayron Poueymiroy; J Javier Aguilera; Saipraveen Srinivasan; Yun Wang; Louise C Serpell; Wilfredo Colón
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

3.  Dynamics of thermodynamically stable, kinetically trapped, and inhibitor-bound states of pepsin.

Authors:  Derek R Dee; Brenna Myers; Rickey Y Yada
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

4.  Protein folding pathways and state transitions described by classical equations of motion of an elastic network model.

Authors:  Gareth Williams; Andrew J Toon
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

5.  Mycobacteriophage cell binding proteins for the capture of mycobacteria.

Authors:  Denis Arutyunov; Upasana Singh; Amr El-Hawiet; Henrique Dos Santos Seckler; Sanaz Nikjah; Maju Joe; Yu Bai; Todd L Lowary; John S Klassen; Stephane Evoy; Christine M Szymanski
Journal:  Bacteriophage       Date:  2014-12-16

Review 6.  Chaperoning osteogenesis: new protein-folding disease paradigms.

Authors:  Elena Makareeva; Nydea A Aviles; Sergey Leikin
Journal:  Trends Cell Biol       Date:  2010-12-21       Impact factor: 20.808

7.  Understanding the relevance of local conformational stability and dynamics to the aggregation propensity of an IgG1 and IgG2 monoclonal antibodies.

Authors:  Santosh V Thakkar; Neha Sahni; Sangeeta B Joshi; Bruce A Kerwin; Feng He; David B Volkin; C Russell Middaugh
Journal:  Protein Sci       Date:  2013-08-19       Impact factor: 6.725

8.  Circular dichroism and the secondary structure of the ROF2 protein from Arabidopsis thaliana.

Authors:  Liliana Lighezan; David Meiri; Adina Breiman; Adrian Neagu
Journal:  J Biol Phys       Date:  2013-06-19       Impact factor: 1.365

9.  Understanding the mechanism of prosegment-catalyzed folding by solution NMR spectroscopy.

Authors:  Shenlin Wang; Yasumi Horimoto; Derek R Dee; Rickey Y Yada
Journal:  J Biol Chem       Date:  2013-11-21       Impact factor: 5.157

10.  The Kinetic Stability of a Full-Length Antibody Light Chain Dimer Determines whether Endoproteolysis Can Release Amyloidogenic Variable Domains.

Authors:  Gareth J Morgan; Jeffery W Kelly
Journal:  J Mol Biol       Date:  2016-08-26       Impact factor: 5.469

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