Literature DB >> 20198869

[Construction of protein semantic networks using PubMed/MEDLINE].

E A Ponomarenko, A V Lisitsa, E V Il'gisonis, A I Archakov.   

Abstract

Method is described to produce the protein semantic networks based on the information from PubMed/MEDLINE. In this work we used semantic score to assess the connectivity between two proteins based on the number of shared relevant or related articles. Using such score we created the semantic network for 150 human proteins belonging to different metabolic pathways. Analysis of the network has shown that proteins involved into the same molecular processes were separated into distinct subgraphs.

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Year:  2010        PMID: 20198869

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  3 in total

1.  Use of scientific social networking to improve the research strategies of PubMed readers.

Authors:  Pavel Evdokimov; Alexey Kudryavtsev; Ekaterina Ilgisonis; Elena Ponomarenko; Andrey Lisitsa
Journal:  BMC Res Notes       Date:  2016-02-18

2.  Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Authors:  Artem Lysenko; Michael Defoin-Platel; Keywan Hassani-Pak; Jan Taubert; Charlie Hodgman; Christopher J Rawlings; Mansoor Saqi
Journal:  BMC Bioinformatics       Date:  2011-05-25       Impact factor: 3.169

3.  Creation of Individual Scientific Concept-Centered Semantic Maps Based on Automated Text-Mining Analysis of PubMed.

Authors:  Ekaterina Ilgisonis; Andrey Lisitsa; Valerya Kudryavtseva; Elena Ponomarenko
Journal:  Adv Bioinformatics       Date:  2018-07-26
  3 in total

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