Literature DB >> 20195578

Hydrogen exchange mass spectrometry: what is it and what can it tell us?

Sean R Marcsisin1, John R Engen.   

Abstract

Proteins are undoubtedly some of the most essential molecules of life. While much is known about many proteins, some aspects still remain mysterious. One particularly important aspect of understanding proteins is determining how structure helps dictate function. Continued development and implementation of biophysical techniques that provide information about protein conformation and dynamics is essential. In this review, we discuss hydrogen exchange mass spectrometry and how this method can be used to learn about protein conformation and dynamics. The basic concepts of the method are described, the workflow illustrated, and a few examples of its application are provided.

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Year:  2010        PMID: 20195578      PMCID: PMC2868954          DOI: 10.1007/s00216-010-3556-4

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  30 in total

Review 1.  Investigating the higher order structure of proteins. Hydrogen exchange, proteolytic fragmentation, and mass spectrometry.

Authors:  J R Engen; D L Smith
Journal:  Methods Mol Biol       Date:  2000

2.  Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.

Authors:  Laetitia Cravello; David Lascoux; Eric Forest
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

3.  Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis.

Authors:  David D Weis; Thomas E Wales; John R Engen; Matthew Hotchko; Lynn F Ten Eyck
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-27       Impact factor: 3.109

4.  Characterization of IgG1 Conformation and Conformational Dynamics by Hydrogen/Deuterium Exchange Mass Spectrometry.

Authors:  Damian Houde; Joseph Arndt; Wayne Domeier; Steven Berkowitz; John R Engen
Journal:  Anal Chem       Date:  2009-07-15       Impact factor: 6.986

5.  Allosteric loss-of-function mutations in HIV-1 Nef from a long-term non-progressor.

Authors:  Ronald P Trible; Lori Emert-Sedlak; Thomas E Wales; Velpandi Ayyavoo; John R Engen; Thomas E Smithgall
Journal:  J Mol Biol       Date:  2007-09-11       Impact factor: 5.469

6.  Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry.

Authors:  D L Smith; Y Deng; Z Zhang
Journal:  J Mass Spectrom       Date:  1997-02       Impact factor: 1.982

Review 7.  Hydrogen exchange: the modern legacy of Linderstrøm-Lang.

Authors:  S W Englander; L Mayne; Y Bai; T R Sosnick
Journal:  Protein Sci       Date:  1997-05       Impact factor: 6.725

8.  Identification of an allosterically sensitive unfolding unit in hemoglobin.

Authors:  J J Englander; J R Rogero; S W Englander
Journal:  J Mol Biol       Date:  1983-09-05       Impact factor: 5.469

9.  Abl N-terminal cap stabilization of SH3 domain dynamics.

Authors:  Shugui Chen; Teodora Pene Dumitrescu; Thomas E Smithgall; John R Engen
Journal:  Biochemistry       Date:  2008-05-02       Impact factor: 3.162

10.  Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Authors:  Gordon W Slysz; Charles A H Baker; Benjamin M Bozsa; Anthony Dang; Andrew J Percy; Melissa Bennett; David C Schriemer
Journal:  BMC Bioinformatics       Date:  2009-05-27       Impact factor: 3.169

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  83 in total

1.  Many overlapping peptides for protein hydrogen exchange experiments by the fragment separation-mass spectrometry method.

Authors:  Leland Mayne; Zhong-Yuan Kan; Palaniappan Sevugan Chetty; Alec Ricciuti; Benjamin T Walters; S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-14       Impact factor: 3.109

2.  Molecular insight into the conformational dynamics of the Elongin BC complex and its interaction with HIV-1 Vif.

Authors:  Sean R Marcsisin; John R Engen
Journal:  J Mol Biol       Date:  2010-08-20       Impact factor: 5.469

3.  Local and global structural drivers for the photoactivation of the orange carotenoid protein.

Authors:  Sayan Gupta; Miklos Guttman; Ryan L Leverenz; Kulyash Zhumadilova; Emily G Pawlowski; Christopher J Petzold; Kelly K Lee; Corie Y Ralston; Cheryl A Kerfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-18       Impact factor: 11.205

4.  Identification of a Structural Determinant for Selective Targeting of HDMX.

Authors:  Yael Ben-Nun; Hyuk-Soo Seo; Edward P Harvey; Zachary J Hauseman; Thomas E Wales; Catherine E Newman; Ann M Cathcart; John R Engen; Sirano Dhe-Paganon; Loren D Walensky
Journal:  Structure       Date:  2020-04-30       Impact factor: 5.006

Review 5.  Hydrogen-deuterium exchange mass spectrometry of membrane proteins in lipid nanodiscs.

Authors:  Michelle Redhair; Amanda F Clouser; William M Atkins
Journal:  Chem Phys Lipids       Date:  2019-02-22       Impact factor: 3.329

6.  Neutralizing positive charges at the surface of a protein lowers its rate of amide hydrogen exchange without altering its structure or increasing its thermostability.

Authors:  Bryan F Shaw; Haribabu Arthanari; Max Narovlyansky; Armando Durazo; Dominique P Frueh; Michael P Pollastri; Andrew Lee; Basar Bilgicer; Steven P Gygi; Gerhard Wagner; George M Whitesides
Journal:  J Am Chem Soc       Date:  2010-11-19       Impact factor: 15.419

7.  Peptide modulation of class I major histocompatibility complex protein molecular flexibility and the implications for immune recognition.

Authors:  William F Hawse; Brian E Gloor; Cory M Ayres; Kevin Kho; Elizabeth Nuter; Brian M Baker
Journal:  J Biol Chem       Date:  2013-07-08       Impact factor: 5.157

8.  Nitric oxide synthase domain interfaces regulate electron transfer and calmodulin activation.

Authors:  Brian C Smith; Eric S Underbakke; Daniel W Kulp; William R Schief; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

9.  Characterizing monoclonal antibody structure by carboxyl group footprinting.

Authors:  Parminder Kaur; Sara E Tomechko; Janna Kiselar; Wuxian Shi; Galahad Deperalta; Aaron T Wecksler; Giridharan Gokulrangan; Victor Ling; Mark R Chance
Journal:  MAbs       Date:  2015       Impact factor: 5.857

10.  Effects of the Iowa and Milano mutations on apolipoprotein A-I structure and dynamics determined by hydrogen exchange and mass spectrometry.

Authors:  Palaniappan Sevugan Chetty; Maki Ohshiro; Hiroyuki Saito; Padmaja Dhanasekaran; Sissel Lund-Katz; Leland Mayne; Walter Englander; Michael C Phillips
Journal:  Biochemistry       Date:  2012-10-24       Impact factor: 3.162

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