Literature DB >> 20194966

The influence of horizontal gene transfer on the mean fitness of unicellular populations in static environments.

Yoav Raz1, Emmanuel Tannenbaum.   

Abstract

Horizontal gene transfer (HGT) is believed to be a major source of genetic variation, particularly for prokaryotes. It is believed that horizontal gene transfer plays a major role in shaping bacterial genomes and is also believed to be responsible for the relatively rapid dissemination and acquisition of new, adaptive traits across bacterial strains. Despite the importance of horizontal gene transfer as a major source of genetic variation, the bulk of research on theoretical evolutionary dynamics and population genetics has focused on point mutations (sometimes coupled with gene duplication events) as the main engine of genomic change. Here, we seek to specifically model HGT processes in bacterial cells, by developing a mathematical model describing the influence that conjugation-mediated HGT has on the mutation-selection balance in an asexually reproducing population of unicellular, prokaryotic organisms. It is assumed that mutation-selection balance is reached in the presence of a fixed background concentration of antibiotic, to which the population must become resistant to survive. We find that HGT has a nontrivial effect on the mean fitness of the population. However, one of the central results that emerge from our analysis is that, at mutation-selection balance, conjugation-mediated HGT has a slightly deleterious effect on the mean fitness of a population. Therefore, we conclude that HGT does not confer a selection advantage in static environments. Rather, its advantage must lie in its ability to promote faster adaptation in dynamic environments, an interpretation that is consistent with the observation that HGT can be promoted by environmental stresses on a population.

Mesh:

Year:  2010        PMID: 20194966      PMCID: PMC2870967          DOI: 10.1534/genetics.109.113613

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  14 in total

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Authors:  H Ochman; J G Lawrence; E A Groisman
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

2.  Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.

Authors:  E Denamur; G Lecointre; P Darlu; O Tenaillon; C Acquaviva; C Sayada; I Sunjevaric; R Rothstein; J Elion; F Taddei; M Radman; I Matic
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

3.  Natural conjugative plasmids induce bacterial biofilm development.

Authors:  J M Ghigo
Journal:  Nature       Date:  2001-07-26       Impact factor: 49.962

4.  Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number.

Authors:  K Park; E Han; J Paulsson; D K Chattoraj
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

Review 5.  Molecular mechanisms that confer antibacterial drug resistance.

Authors:  C Walsh
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

Review 6.  Ancient horizontal gene transfer.

Authors:  James R Brown
Journal:  Nat Rev Genet       Date:  2003-02       Impact factor: 53.242

Review 7.  Horizontal gene transfer: a critical view.

Authors:  C G Kurland; B Canback; Otto G Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

8.  Genome evolution and adaptation in a long-term experiment with Escherichia coli.

Authors:  Jeffrey E Barrick; Dong Su Yu; Sung Ho Yoon; Haeyoung Jeong; Tae Kwang Oh; Dominique Schneider; Richard E Lenski; Jihyun F Kim
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

9.  Plasmid incompatibility and control of replication: copy mutants of the R-factor R1 in Escherichia coli K-12.

Authors:  B E Uhlin; K Nordström
Journal:  J Bacteriol       Date:  1975-11       Impact factor: 3.490

10.  SOS response promotes horizontal dissemination of antibiotic resistance genes.

Authors:  John W Beaber; Bianca Hochhut; Matthew K Waldor
Journal:  Nature       Date:  2003-12-21       Impact factor: 49.962

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  9 in total

1.  Population-Dynamic Modeling of Bacterial Horizontal Gene Transfer by Natural Transformation.

Authors:  Junwen Mao; Ting Lu
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Cyclic di-GMP-Mediated Regulation of Gene Transfer and Motility in Rhodobacter capsulatus.

Authors:  Purvikalyan Pallegar; Lourdes Peña-Castillo; Evan Langille; Mark Gomelsky; Andrew S Lang
Journal:  J Bacteriol       Date:  2020-01-02       Impact factor: 3.490

3.  Mathematical modelling to study the horizontal transfer of antimicrobial resistance genes in bacteria: current state of the field and recommendations.

Authors:  Quentin J Leclerc; Jodi A Lindsay; Gwenan M Knight
Journal:  J R Soc Interface       Date:  2019-08-14       Impact factor: 4.118

4.  Phylogenetic analysis of Mycobacterium massiliense strains having recombinant rpoB gene laterally transferred from Mycobacterium abscessus.

Authors:  Byoung-Jun Kim; Ga-Na Kim; Bo-Ram Kim; Tae-Sun Shim; Yoon-Hoh Kook; Bum-Joon Kim
Journal:  PLoS One       Date:  2017-06-12       Impact factor: 3.240

5.  Horizontal gene transfer of Chlamydia: Novel insights from tree reconciliation.

Authors:  Hyaekang Kim; Woori Kwak; Sook Hee Yoon; Dae-Kyung Kang; Heebal Kim
Journal:  PLoS One       Date:  2018-04-05       Impact factor: 3.240

6.  New Mycobacteroides abscessus subsp. massiliense strains with recombinant hsp65 gene laterally transferred from Mycobacteroides abscessus subsp. abscessus: Potential for misidentification of M. abscessus strains with the hsp65-based method.

Authors:  Byoung-Jun Kim; Ga-Na Kim; Bo-Ram Kim; Tae-Sun Shim; Yoon-Hoh Kook; Bum-Joon Kim
Journal:  PLoS One       Date:  2019-09-13       Impact factor: 3.240

7.  Horizontal gene transfer from genetically modified plants - Regulatory considerations.

Authors:  Joshua G Philips; Elena Martin-Avila; Andrea V Robold
Journal:  Front Bioeng Biotechnol       Date:  2022-08-31

8.  Repression/depression of conjugative plasmids and their influence on the mutation-selection balance in static environments.

Authors:  Yoav Atsmon-Raz; Yoav Raz; Emmanuel David Tannenbaum
Journal:  PLoS One       Date:  2014-05-08       Impact factor: 3.240

Review 9.  CRISPR: a journey of gene-editing based medicine.

Authors:  Zhabiz Golkar
Journal:  Genes Genomics       Date:  2020-10-22       Impact factor: 1.839

  9 in total

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