Literature DB >> 20192318

Protein elasticity probed with two synchrotron-based techniques.

Bogdan M Leu1, Ahmet Alatas, Harald Sinn, E Ercan Alp, Ayman H Said, Hasan Yavaş, Jiyong Zhao, J Timothy Sage, Wolfgang Sturhahn.   

Abstract

Compressibility characterizes three interconnecting properties of a protein: dynamics, structure, and function. The compressibility values for the electron-carrying protein cytochrome c and for other proteins, as well, available in the literature vary considerably. Here, we apply two synchrotron-based techniques--nuclear resonance vibrational spectroscopy and inelastic x-ray scattering--to measure the adiabatic compressibility of this protein. This is the first report of the compressibility of any material measured with this method. Unlike the methods previously used, this novel approach probes the protein globally, at ambient pressure, does not require the separation of protein and solvent contributions to the total compressibility, and uses samples that contain the heme iron, as in the native state. We show, by comparing our results with molecular dynamics predictions, that the compressibility is almost independent of temperature. We discuss potential applications of this method to other materials beyond proteins.

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Year:  2010        PMID: 20192318     DOI: 10.1063/1.3332585

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Investigations of the low-frequency spectral density of cytochrome c upon equilibrium unfolding.

Authors:  Yuhan Sun; Venugopal Karunakaran; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

2.  Investigations of the low frequency modes of ferric cytochrome c using vibrational coherence spectroscopy.

Authors:  Venugopal Karunakaran; Yuhan Sun; Abdelkrim Benabbas; Paul M Champion
Journal:  J Phys Chem B       Date:  2014-05-30       Impact factor: 2.991

3.  Experimental mapping of short-wavelength phonons in proteins.

Authors:  Utsab R Shrestha; Eugene Mamontov; Hugh M O'Neill; Qiu Zhang; Alexander I Kolesnikov; Xiangqiang Chu
Journal:  Innovation (Camb)       Date:  2021-12-17
  3 in total

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