Literature DB >> 20187130

Evidence of epistasis between TNFRSF14 and TNFRSF6B polymorphisms in patients with rheumatoid arthritis.

Nieves Perdigones1, Ana G Vigo, José R Lamas, Alfonso Martínez, Alejandro Balsa, Dora Pascual-Salcedo, Emilio G de la Concha, Benjamín Fernández-Gutiérrez, Elena Urcelay.   

Abstract

OBJECTIVE: Genetic variants located close to 2 genes codifying for members of the tumor necrosis factor receptor superfamily (TNFRSF), TNFRSF14 and TNFRSF6B, have recently been associated with rheumatoid arthritis (RA) and with inflammatory bowel disease susceptibility, respectively. The TNFRSF6B protein has been related to osteoclastic activity, apoptosis inhibition, and modulation of T cell activation and differentiation. Interestingly, peptides encoded by both genes bind a common ligand called LIGHT, which is overexpressed in RA synovium. The aim of this study was to investigate the combined effect of the TNFRSF14 rs6684865 and TNFRSF6B rs4809330 polymorphisms in RA predisposition.
METHODS: TaqMan genotyping of these polymorphisms was conducted in 649 patients with RA and 553 ethnically matched control subjects (first study). To validate the results, an independent replication cohort with 211 patients and 255 control subjects was additionally studied (replication study).
RESULTS: The frequency of the rs6684865 G allele in the RA subgroup with the rs4809330 GG susceptibility genotype was significantly higher than that in the other patients with RA (74% versus 65%; P = 0.002) or in control subjects (74% versus 67%; P = 0.003). Because no significant differences between the control and patient groups in the first and replication studies were observed, the data were pooled. When compared with control subjects overall, the effect of the rs6684865 G allele in the group with the rs4809330 GG genotype (odds ratio [OR] 1.49) was significantly different from the effect observed in the group carrying the rs4809330 A allele (OR 0.97; P = 0.0015 by Breslow-Day test of homogeneity).
CONCLUSION: We have identified and replicated a novel gene-gene interaction between 2 polymorphisms of TNFRSF members in Spanish patients with RA, based on the hypothesis of shared pathogenic pathways in complex diseases.

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Year:  2010        PMID: 20187130     DOI: 10.1002/art.27292

Source DB:  PubMed          Journal:  Arthritis Rheum        ISSN: 0004-3591


  8 in total

1.  Human Epistatic Interaction Controls IL7R Splicing and Increases Multiple Sclerosis Risk.

Authors:  Gaddiel Galarza-Muñoz; Farren B S Briggs; Irina Evsyukova; Geraldine Schott-Lerner; Edward M Kennedy; Tinashe Nyanhete; Liuyang Wang; Laura Bergamaschi; Steven G Widen; Georgia D Tomaras; Dennis C Ko; Shelton S Bradrick; Lisa F Barcellos; Simon G Gregory; Mariano A Garcia-Blanco
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 2.  Tumor necrosis factor superfamily in innate immunity and inflammation.

Authors:  John Šedý; Vasileios Bekiaris; Carl F Ware
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-18       Impact factor: 10.005

3.  Gene-gene interaction of BLK, TNFSF4, TRAF1, TNFAIP3, and REL in systemic lupus erythematosus.

Authors:  Xu-jie Zhou; Xiao-lan Lu; Swapan K Nath; Ji-cheng Lv; Sai-nan Zhu; Hai-zhen Yang; Lian-xiang Qin; Ming-hui Zhao; Yin Su; Nan Shen; Zhan-guo Li; Hong Zhang
Journal:  Arthritis Rheum       Date:  2012-01

4.  Variants in TNFSF4, TNFAIP3, TNIP1, BLK, SLC15A4 and UBE2L3 interact to confer risk of systemic lupus erythematosus in Chinese population.

Authors:  Xian-Bo Zuo; Yu-Jun Sheng; Su-Juan Hu; Jin-Ping Gao; Yang Li; Hua-Yang Tang; Xian-Fa Tang; Hui Cheng; Xian-Yong Yin; Lei-Lei Wen; Liang-Dan Sun; Sen Yang; Yong Cui; Xue-Jun Zhang
Journal:  Rheumatol Int       Date:  2013-10-04       Impact factor: 2.631

5.  Gene network analysis of small molecules with autoimmune disease associated genes predicts a novel strategy for drug efficacy.

Authors:  Amit K Maiti; Swapan K Nath
Journal:  Autoimmun Rev       Date:  2012-09-18       Impact factor: 9.754

6.  Lack of replication of interactions between polymorphisms in rheumatoid arthritis susceptibility: case-control study.

Authors:  Aida Ferreiro-Iglesias; Manuel Calaza; Eva Perez-Pampin; Francisco J Lopez Longo; Jose L Marenco; Francisco J Blanco; Javier Narvaez; Federico Navarro; Juan D Cañete; Arturo R de la Serna; Isidoro Gonzalez-Alvaro; Gabriel Herrero-Beaumont; Jose L Pablos; Alejandro Balsa; Benjamin Fernandez-Gutierrez; Rafael Caliz; Juan J Gomez-Reino; Antonio Gonzalez
Journal:  Arthritis Res Ther       Date:  2014-09-27       Impact factor: 5.156

7.  A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis.

Authors:  Venugopal Panga; Srivatsan Raghunathan
Journal:  PLoS One       Date:  2018-06-21       Impact factor: 3.240

8.  Associations between CD160 polymorphisms and autoimmune thyroid disease: a case-control study.

Authors:  Weiwei He; Jing Zhao; Xuerong Liu; Sheli Li; Kaida Mu; Jing Zhang; Jin-An Zhang
Journal:  BMC Endocr Disord       Date:  2021-07-08       Impact factor: 2.763

  8 in total

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