Literature DB >> 20186480

The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes.

Robi Tacutu1, Arie Budovsky, Vadim E Fraifeld.   

Abstract

Hundreds of genes and miRNAs have been identified as being involved in the determination of longevity, aging patterns and in the development of age-related diseases (ARDs). The interplay between these genes as well as the role of miRNAs in the context of protein-protein interaction networks has as yet been poorly addressed. This work was undertaken in order to integrate the data accumulated in the field, from a network-based perspective. The results are organized in the NetAge database-an online database and network analysis tools for biogerontological research ( http://www.netage-project.org ). The NetAge database contains gene sets and miRNA-regulated PPI networks for longevity, ARDs and aging-associated processes, and also common signatures (overlapping networks). The database is available through the NetAge website, which provides the necessary bioinformatics tools for searching and browsing the networks, as well as showing network info and statistics. By making these resources available online, we hope to provide the scientific community with a new, network-oriented platform for biogerontological research, and encourage greater participation in the systems biology of aging.

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Year:  2010        PMID: 20186480     DOI: 10.1007/s10522-010-9265-8

Source DB:  PubMed          Journal:  Biogerontology        ISSN: 1389-5729            Impact factor:   4.277


  31 in total

1.  Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases.

Authors:  Jialiang Yang; Tao Huang; Francesca Petralia; Quan Long; Bin Zhang; Carmen Argmann; Yong Zhao; Charles V Mobbs; Eric E Schadt; Jun Zhu; Zhidong Tu
Journal:  Sci Rep       Date:  2015-10-19       Impact factor: 4.379

2.  Islet adaptation to obesity and insulin resistance in WNIN/GR-Ob rats.

Authors:  Himadri Singh; Sireesha Ganneru; Venkata Malakapalli; Maniprabha Chalasani; Giridharan Nappanveettil; Ramesh R Bhonde; Vijayalakshmi Venkatesan
Journal:  Islets       Date:  2014       Impact factor: 2.694

3.  Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats.

Authors:  Elena E Korbolina; Nikita I Ershov; Leonid O Bryzgalov; Natalia G Kolosova
Journal:  BMC Genomics       Date:  2014-12-19       Impact factor: 3.969

Review 4.  At the Crossroads Between Neurodegeneration and Cancer: A Review of Overlapping Biology and Its Implications.

Authors:  Alexander L Houck; Sahba Seddighi; Jane A Driver
Journal:  Curr Aging Sci       Date:  2018

Review 5.  Are there roles for brain cell senescence in aging and neurodegenerative disorders?

Authors:  Florence C C Tan; Emmette R Hutchison; Erez Eitan; Mark P Mattson
Journal:  Biogerontology       Date:  2014-10-11       Impact factor: 4.277

6.  Prediction of C. elegans longevity genes by human and worm longevity networks.

Authors:  Robi Tacutu; David E Shore; Arie Budovsky; João Pedro de Magalhães; Gary Ruvkun; Vadim E Fraifeld; Sean P Curran
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

Review 7.  Computational biology for ageing.

Authors:  Daniela Wieser; Irene Papatheodorou; Matthias Ziehm; Janet M Thornton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-01-12       Impact factor: 6.237

8.  Molecular links between cellular senescence, longevity and age-related diseases - a systems biology perspective.

Authors:  Robi Tacutu; Arie Budovsky; Hagai Yanai; Vadim E Fraifeld
Journal:  Aging (Albany NY)       Date:  2011-12       Impact factor: 5.682

9.  Virtual interactomics of proteins from biochemical standpoint.

Authors:  Jaroslav Kubrycht; Karel Sigler; Pavel Souček
Journal:  Mol Biol Int       Date:  2012-08-08

10.  Human Ageing Genomic Resources: integrated databases and tools for the biology and genetics of ageing.

Authors:  Robi Tacutu; Thomas Craig; Arie Budovsky; Daniel Wuttke; Gilad Lehmann; Dmitri Taranukha; Joana Costa; Vadim E Fraifeld; João Pedro de Magalhães
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

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