| Literature DB >> 20185809 |
Li Bian1, Robert L Hanson, Victoria Ossowski, Kim Wiedrich, Clinton C Mason, Michael Traurig, Yunhua L Muller, Sayuko Kobes, William C Knowler, Leslie J Baier, Clifton Bogardus.
Abstract
OBJECTIVE: Prior genome-wide association and exon array expression studies both provided suggestive evidence that apoptosis signal regulating kinase 1 (ASK1) may influence in vivo insulin action in Pima Indians. Genetic variants in or near ASK1 were analyzed to assess the role of this gene in insulin action and type 2 diabetes. RESEARCH DESIGN AND METHODS: Genotypic data from 31 variants were used to determine the linkage disequilibrium pattern across ASK1 in Pima Indians. Eight tag SNPs were initially genotyped in 3,501 full-heritage Pima Indians. Replication for association with diabetes was assessed in a second population-based sample of 3,723 Native Americans and the published DIAGRAM study. Quantitative traits were analyzed in 536 nondiabetic Native Americans, and ASK1 expression was examined in skeletal muscle of 153 nondiabetic Native Americans.Entities:
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Year: 2010 PMID: 20185809 PMCID: PMC2857909 DOI: 10.2337/db09-1700
Source DB: PubMed Journal: Diabetes ISSN: 0012-1797 Impact factor: 9.461
Characteristics of the sample sets used in this study
| Sample set | Full-heritage Pimas | Non–full-heritage Pimas | Diabetes status | Mean age (years) | % Male | Mean BMI (kg/m2) | |
|---|---|---|---|---|---|---|---|
| Full-heritage Pima Indians | 3,501 | 3,501 | 0 | Diabetic (45%) | 48.5 ± 14.1 | 37 | 38.5 ± 8.4 |
| Nondiabetic | 31.1 ± 14.5 | 46 | 35.7 ± 8.2 | ||||
| Native Americans | 3,723 | 188 | 3,535 | Diabetic (20%) | 42.5 ± 14.2 | 41 | 38.4 ± 8.8 |
| Nondiabetic | 23.6 ± 10.9 | 47 | 33.5 ± 8.4 | ||||
| HOMA-IR analysis | 2,549 | 2,549 | 0 | Nondiabetic | 34.1 ± 13.1 | 43 | 35.8 ± 8.3 |
| 100K GWAS for pre-diabetic traits | 536 | 378 | 158 | Nondiabetic | 26.8 ± 6.2 | 59 | 32.9 ± 6.8 |
| Muscle expression study | 153 | 98 | 55 | Nondiabetic | 29.4 ± 7.2 | 70 | 32.7 ± 6.4 |
| Informative for in vivo insulin action | 116 | 72 | 44 | Nondiabetic | 29.8 ± 7.0 | 70 | 32.3 ± 6.1 |
Data are means ± SD unless otherwise indicated.
*Subset of the full-heritage Pima Indian sample.
†Subset of both the full-heritage Pima Indian and Native American samples.
‡Subset of the subjects analyzed in the 100K GWAS.
§Subset of the subjects with expression data.
FIG. 1.Relative position and LD pattern of the 31 variants across the ASK1 locus in Pima Indians. LD is shown as r2 and the eight tag SNPs (no. 1, 5, 7, 8, 9, 10, 20, and 31) were selected by Tagger algorithm (r2 ≥0.8, minor allele frequency >0.05).
Association of ASK1 tag SNPs with type 2 diabetes in the Pima studies (full-heritage Pima Indian, Native American, and combined samples), the DIAGRAM study, and the combined analysis of full-heritage Pimas, Native Americans, and DIAGRAM Caucasians (meta-analysis)
| SNP (A1/A2) | Full-heritage Pima Indian ( | Native American ( | Combined ( | DIAGRAM ( | Meta-analysis | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A1 (%) (D/ND) | OR (95% CI) | A1 (%) (D/ND) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||||
| rs4351280 (A/G) | 0.85/0.82 | 0.08 | 1.15 (0.98–1.35) | 0.52 | 0.34 | 0.96 (0.88–1.05) | |||||||
| rs3765258 (G/A) | 0.16/0.16 | 0.67 | 1.03 (0.88–1.20) | ||||||||||
| rs7775356 (T/A) | 0.46/0.44 | 0.04 | 1.14 (1.01–1.28) | 0.46/0.43 | 0.11 | 1.13 (0.97–1.31) | 0.009 | 1.13 (1.03–1.24) | 0.22 | 0.21 | 0.96 (0.90–1.02) | 0.68 | 1.01 (0.96–1.06) |
| rs2237269 (G/C) | 0.83/0.83 | 0.76 | 1.02 (0.88–1.19) | 0.78 | 0.73 | 0.99 (0.90–1.07) | |||||||
| rs2076260 (T/C) | 0.79/0.78 | 0.43 | 1.06 (0.92–1.22) | 0.77 | 0.70 | 0.98 (0.91–1.07) | |||||||
| rs3765259 (T/C) | 0.28/0.26 | 0.37 | 1.06 (0.93–1.20) | ||||||||||
| rs1570056 (C/T) | 0.31/0.27 | 0.007 | 1.19 (1.05–1.36) | 0.31/0.33 | 0.97 | 1.00 (0.85–1.16) | 0.04 | 1.11 (1.01–1.22) | 0.026 | 0.06 | 1.06 (1.00–1.12) | 0.008 | 1.07 (1.02–1.13) |
| rs35898099 (G/A) | 0.83/0.80 | 0.003 | 1.27 (1.08–1.47) | 0.80/0.79 | 0.04 | 1.22 (1.01–1.47) | 0.0004 | 1.24 (1.10–1.40) | |||||
Odds ratio (OR) is expressed as per copy of allele 1. P values were adjusted for age, sex, and birth year. For the Native American sample, P values were also adjusted for the individual estimate of European admixture. For DIAGRAM study, both *Z statistic–based P value and †fixed-effect model P value with OR (95% CI) were shown. A1, allele 1; A2, allele 2; D, diabetic; ND, nondiabetic.
Associations of rs1570056 (C/T) with diabetes-related traits in the nondiabetic Native Americans who had been metabolically phenotyped
| Phenotype | ||||
|---|---|---|---|---|
| CT | TT | |||
| Female/male ( | 24/29 | 73/98 | 113/169 | |
| Age (years) | 27 ± 0.9 | 27 ± 0.5 | 27 ± 0.4 | |
| Percent body fat | 32.3 ± 1.2 | 31.8 ± 0.6 | 32.2 ± 0.5 | 0.67 |
| BMI (kg/m2) | 32.6 ± 0.8 | 32.6 ± 0.5 | 33.3 ± 0.4 | 0.53 |
| Fasting plasma glucose (mg/dl) | 89.1 ± 1.4 | 88.3 ± 0.7 | 89.0 ± 0.6 | 0.59 |
| 2-h plasma glucose (mg/dl) | 131.8 ± 4.2 | 121.1 ± 2.4 | 121.0 ± 1.8 | 0.07 |
| Log10 fasting plasma insulin (μU/ml) | 1.60 ± 0.03 | 1.53 ± 0.02 | 1.54 ± 0.01 | 0.04 |
| Log10 2-h plasma insulin (μU/ml) | 2.26 ± 0.04 | 2.17 ± 0.03 | 2.15 ± 0.02 | 0.04 |
| Endogenous glucose production basally (mg · kg EMBS−1 · min−1) | 1.91 ± 0.03 | 1.89 ± 0.02 | 1.91 ± 0.01 | 0.66 |
| Log10 insulin-stimulated glucose disposal (mg · kg EMBS−1 · min−1) | 0.52 ± 0.02 | 0.57 ± 0.01 | 0.56 ± 0.01 | 0.02 |
| Endogenous glucose production during the clamp (mg · kg EMBS−1 · min−1) | 0.39 ± 0.05 | 0.30 ± 0.03 | 0.38 ± 0.02 | 0.64 |
| Log10 acute insulin response (μU/ml) | 2.30 ± 0.09 ( | 2.32 ± 0.03 ( | 2.36 ± 0.02 ( | 0.48 |
Data are raw (unadjusted) means ± SE. P values are given for an additive model and are adjusted for the covariates as indicated:
*age,
†sex,
‡family membership,
§Pima heritage,
‖percent body fat, and
¶insulin-stimulated glucose disposal rate. The analysis of acute insulin response was restricted to 278 full-heritage Pima Indians who were normal glucose tolerant, and the number of the subjects for each genotypic group is shown in the corresponding parentheses. The diabetic risk allele (C) is shown in italics. EMBS, estimated metabolic body size.
FIG. 2.Association of rs1570056 with ASK1 expression in skeletal muscle from 153 nondiabetic Native Americans. Data were raw means ± SE. P value was calculated under an additive model and adjusted for age, sex, percent body fat, and Pima heritage. Before the analysis, the relative ASK1 expression levels were logarithmically transformed to approximate the normal distribution.
FIG. 3.Positive correlation between ASK1 expression in skeletal muscle and in vivo insulin action (insulin-stimulated glucose disposal). Before the analysis, both in vivo insulin action (insulin-stimulated glucose disposal) and the relative ASK1 expression levels were logarithmically transformed to approximate the normal distribution. P value was adjusted for age, sex, percent body fat, and Pima heritage. EMBS, estimated metabolic body size.