Literature DB >> 20179741

A new set of markers for human identification based on 32 polymorphic Alu insertions.

Ilgar Z Mamedov1, Irina A Shagina, Marya A Kurnikova, Sergey N Novozhilov, Dmitry A Shagin, Yury B Lebedev.   

Abstract

A number of genetic systems for human genetic identification based on short tandem repeats or single nucleotide polymorphisms are widely used for crime detection, kinship studies and in analysis of victims of mass disasters. Here, we have developed a new set of 32 molecular genetic markers for human genetic identification based on polymorphic retroelement insertions. Allele frequencies were determined in a group of 90 unrelated individuals from four genetically distant populations of the Russian Federation. The mean match probability and probability of paternal exclusion, calculated based on population data, were 5.53 x 10(-14) and 99.784%, respectively. The developed system is cheap and easy to use as compared to all previously published methods. The application of fluorescence-based methods for allele discrimination allows to use the human genetic identification set in automatic and high-throughput formats.

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Year:  2010        PMID: 20179741      PMCID: PMC2987352          DOI: 10.1038/ejhg.2010.22

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  33 in total

Review 1.  Alu repeats and human genomic diversity.

Authors:  Mark A Batzer; Prescott L Deininger
Journal:  Nat Rev Genet       Date:  2002-05       Impact factor: 53.242

2.  Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus.

Authors:  I Nasidze; G M Risch; M Robichaux; S T Sherry; M A Batzer; M Stoneking
Journal:  Eur J Hum Genet       Date:  2001-04       Impact factor: 4.246

3.  Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.

Authors:  Ilgar Mamedov; Anastasia Batrak; Anton Buzdin; Elena Arzumanyan; Yuri Lebedev; Eugene D Sverdlov
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

4.  Human population genetic structure and inference of group membership.

Authors:  Michael J Bamshad; Stephen Wooding; W Scott Watkins; Christopher T Ostler; Mark A Batzer; Lynn B Jorde
Journal:  Am J Hum Genet       Date:  2003-01-28       Impact factor: 11.025

5.  Two problematic human polymorphic Alu insertions.

Authors:  Javier R Luis; Maria C Terreros; Laisel Martinez; Dina Rojas; Rene J Herrera
Journal:  Electrophoresis       Date:  2003-07       Impact factor: 3.535

6.  Generation of human DNA profiles by Alu-based multiplex polymerase chain reaction.

Authors:  David H Kass
Journal:  Anal Biochem       Date:  2003-10-01       Impact factor: 3.365

Review 7.  Forensic DNA typing by capillary electrophoresis using the ABI Prism 310 and 3100 genetic analyzers for STR analysis.

Authors:  John M Butler; Eric Buel; Federica Crivellente; Bruce R McCord
Journal:  Electrophoresis       Date:  2004-06       Impact factor: 3.535

8.  Frequency assessment of SNPs for forensic identification in different populations.

Authors:  Emiliano Giardina; Irene Predazzi; Ilenia Pietrangeli; Paola Asili; Patrizio Marsala; Luciano Gabriele; Claudio Pipolo; Omero Ricci; Claudia Martone; Aldo Spinella; Giuseppe Novelli
Journal:  Forensic Sci Int Genet       Date:  2007-06-19       Impact factor: 4.882

9.  Phylogenetics of worldwide human populations as determined by polymorphic Alu insertions.

Authors:  Gabriela Antunez-de-Mayolo; Adriana Antunez-de-Mayolo; Pamela Antunez-de-Mayolo; Surinder S Papiha; Michael Hammer; Juan J Yunis; Emilio J Yunis; Chendi Damodaran; Marian Martinez de Pancorbo; Jose Luis Caeiro; Valery P Puzyrev; Rene J Herrera
Journal:  Electrophoresis       Date:  2002-09       Impact factor: 3.535

10.  Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

Authors:  W Scott Watkins; Alan R Rogers; Christopher T Ostler; Steve Wooding; Michael J Bamshad; Anna-Marie E Brassington; Marion L Carroll; Son V Nguyen; Jerilyn A Walker; B V Ravi Prasad; P Govinda Reddy; Pradipta K Das; Mark A Batzer; Lynn B Jorde
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043

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  4 in total

1.  Development of Novel High-Resolution Melting-Based Assays for Genotyping Two Alu Insertion Polymorphisms (FXIIIB and PV92).

Authors:  Yeimy González-Giraldo; Marisol Rodríguez-Dueñas; Diego A Forero
Journal:  Mol Biotechnol       Date:  2016-03       Impact factor: 2.695

2.  Evaluation of InnoTyper® 21 in a sample of Rio de Janeiro population as an alternative forensic panel.

Authors:  R S Moura-Neto; I C T Mello; R Silva; A P C Maette; C G Bottino; A Woerner; J King; F Wendt; B Budowle
Journal:  Int J Legal Med       Date:  2017-07-26       Impact factor: 2.686

Review 3.  Transcriptome variation in human populations and its potential application in forensics.

Authors:  P Daca-Roszak; E Zietkiewicz
Journal:  J Appl Genet       Date:  2019-08-10       Impact factor: 3.240

4.  An Alu insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project.

Authors:  P Prakrithi; Khushboo Singhal; Disha Sharma; Abhinav Jain; Rahul C Bhoyar; Mohamed Imran; Vigneshwar Senthilvel; Mohit Kumar Divakar; Anushree Mishra; Vinod Scaria; Sridhar Sivasubbu; Mitali Mukerji
Journal:  NAR Genom Bioinform       Date:  2022-02-15
  4 in total

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