Literature DB >> 20178763

The evolution of human genetic and phenotypic variation in Africa.

Michael C Campbell1, Sarah A Tishkoff.   

Abstract

Africa is the birthplace of modern humans, and is the source of the geographic expansion of ancestral populations into other regions of the world. Indigenous Africans are characterized by high levels of genetic diversity within and between populations. The pattern of genetic variation in these populations has been shaped by demographic events occurring over the last 200,000 years. The dramatic variation in climate, diet, and exposure to infectious disease across the continent has also resulted in novel genetic and phenotypic adaptations in extant Africans. This review summarizes some recent advances in our understanding of the demographic history and selective pressures that have influenced levels and patterns of diversity in African populations. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20178763      PMCID: PMC2945812          DOI: 10.1016/j.cub.2009.11.050

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  74 in total

1.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

2.  Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers.

Authors:  Lluís Quintana-Murci; Hélène Quach; Christine Harmant; Francesca Luca; Blandine Massonnet; Etienne Patin; Lucas Sica; Patrick Mouguiama-Daouda; David Comas; Shay Tzur; Oleg Balanovsky; Kenneth K Kidd; Judith R Kidd; Lolke van der Veen; Jean-Marie Hombert; Antoine Gessain; Paul Verdu; Alain Froment; Serge Bahuchet; Evelyne Heyer; Jean Dausset; Antonio Salas; Doron M Behar
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

3.  Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa.

Authors:  Paul Verdu; Frederic Austerlitz; Arnaud Estoup; Renaud Vitalis; Myriam Georges; Sylvain Théry; Alain Froment; Sylvie Le Bomin; Antoine Gessain; Jean-Marie Hombert; Lolke Van der Veen; Lluis Quintana-Murci; Serge Bahuchet; Evelyne Heyer
Journal:  Curr Biol       Date:  2009-02-05       Impact factor: 10.834

4.  Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa.

Authors:  Brenna M Henn; Christopher Gignoux; Alice A Lin; Peter J Oefner; Peidong Shen; Rosaria Scozzari; Fulvio Cruciani; Sarah A Tishkoff; Joanna L Mountain; Peter A Underhill
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

Review 5.  Next-generation DNA sequencing methods.

Authors:  Elaine R Mardis
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

6.  Behavioral inferences from the Skhul/Qafzeh early modern human hand remains.

Authors:  W A Niewoehner
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-06       Impact factor: 11.205

7.  Whole-mtDNA genome sequence analysis of ancient African lineages.

Authors:  Mary Katherine Gonder; Holly M Mortensen; Floyd A Reed; Alexandra de Sousa; Sarah A Tishkoff
Journal:  Mol Biol Evol       Date:  2006-12-28       Impact factor: 16.240

8.  Diet and the evolution of human amylase gene copy number variation.

Authors:  George H Perry; Nathaniel J Dominy; Katrina G Claw; Arthur S Lee; Heike Fiegler; Richard Redon; John Werner; Fernando A Villanea; Joanna L Mountain; Rajeev Misra; Nigel P Carter; Charles Lee; Anne C Stone
Journal:  Nat Genet       Date:  2007-09-09       Impact factor: 38.330

9.  Early modern human diversity suggests subdivided population structure and a complex out-of-Africa scenario.

Authors:  Philipp Gunz; Fred L Bookstein; Philipp Mitteroecker; Andrea Stadlmayr; Horst Seidler; Gerhard W Weber
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

10.  Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow.

Authors:  Murray P Cox; August E Woerner; Jeffrey D Wall; Michael F Hammer
Journal:  BMC Genet       Date:  2008-11-27       Impact factor: 2.797

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  61 in total

1.  Ethiopian genetic diversity reveals linguistic stratification and complex influences on the Ethiopian gene pool.

Authors:  Luca Pagani; Toomas Kivisild; Ayele Tarekegn; Rosemary Ekong; Chris Plaster; Irene Gallego Romero; Qasim Ayub; S Qasim Mehdi; Mark G Thomas; Donata Luiselli; Endashaw Bekele; Neil Bradman; David J Balding; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2012-06-21       Impact factor: 11.025

Review 2.  Genome-based nutrition: an intervention strategy for the prevention and treatment of obesity and nonalcoholic steatohepatitis.

Authors:  Sonia Roman; Claudia Ojeda-Granados; Omar Ramos-Lopez; Arturo Panduro
Journal:  World J Gastroenterol       Date:  2015-03-28       Impact factor: 5.742

3.  Origin and differential selection of allelic variation at TAS2R16 associated with salicin bitter taste sensitivity in Africa.

Authors:  Michael C Campbell; Alessia Ranciaro; Daniel Zinshteyn; Renata Rawlings-Goss; Jibril Hirbo; Simon Thompson; Dawit Woldemeskel; Alain Froment; Joseph B Rucker; Sabah A Omar; Jean-Marie Bodo; Thomas Nyambo; Gurja Belay; Dennis Drayna; Paul A S Breslin; Sarah A Tishkoff
Journal:  Mol Biol Evol       Date:  2013-10-30       Impact factor: 16.240

4.  Mosaic maternal ancestry in the Great Lakes region of East Africa.

Authors:  Verónica Gomes; Maria Pala; Antonio Salas; Vanesa Álvarez-Iglesias; António Amorim; Alberto Gómez-Carballa; Ángel Carracedo; Douglas J Clarke; Catherine Hill; Maru Mormina; Marie-Anne Shaw; David W Dunne; Rui Pereira; Vânia Pereira; Maria João Prata; Paula Sánchez-Diz; Teresa Rito; Pedro Soares; Leonor Gusmão; Martin B Richards
Journal:  Hum Genet       Date:  2015-07-19       Impact factor: 4.132

5.  Limited evidence for classic selective sweeps in African populations.

Authors:  Julie M Granka; Brenna M Henn; Christopher R Gignoux; Jeffrey M Kidd; Carlos D Bustamante; Marcus W Feldman
Journal:  Genetics       Date:  2012-09-07       Impact factor: 4.562

6.  Ancient substructure in early mtDNA lineages of southern Africa.

Authors:  Chiara Barbieri; Mário Vicente; Jorge Rocha; Sununguko W Mpoloka; Mark Stoneking; Brigitte Pakendorf
Journal:  Am J Hum Genet       Date:  2013-01-17       Impact factor: 11.025

7.  High osteoporosis risk among East Africans linked to lactase persistence genotype.

Authors:  Constance B Hilliard
Journal:  Bonekey Rep       Date:  2016-06-29

8.  Localizing Components of Shared Transethnic Genetic Architecture of Complex Traits from GWAS Summary Data.

Authors:  Huwenbo Shi; Kathryn S Burch; Ruth Johnson; Malika K Freund; Gleb Kichaev; Nicholas Mancuso; Astrid M Manuel; Natalie Dong; Bogdan Pasaniuc
Journal:  Am J Hum Genet       Date:  2020-05-21       Impact factor: 11.025

9.  Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.

Authors:  Joseph Lachance; Benjamin Vernot; Clara C Elbers; Bart Ferwerda; Alain Froment; Jean-Marie Bodo; Godfrey Lema; Wenqing Fu; Thomas B Nyambo; Timothy R Rebbeck; Kun Zhang; Joshua M Akey; Sarah A Tishkoff
Journal:  Cell       Date:  2012-07-26       Impact factor: 41.582

10.  Prevalence of glaucoma in an urban West African population: the Tema Eye Survey.

Authors:  Donald L Budenz; Keith Barton; Julia Whiteside-de Vos; Joyce Schiffman; Jagadeesh Bandi; Winifred Nolan; Leon Herndon; Hanna Kim; Graham Hay-Smith; James M Tielsch
Journal:  JAMA Ophthalmol       Date:  2013-05       Impact factor: 7.389

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