Literature DB >> 20174991

A mini review of MAR-binding proteins.

Tian-Yun Wang1, Zhong-Min Han, Yu-Rong Chai, Jun-He Zhang.   

Abstract

Genomic DNA encompasses several levels of organization, the nuclear matrix mediates the formation of DNA loop domains that are anchored to matrix attachment regions (MARs). By means of specific interaction with MAR binding proteins (MARBPs), MAR plays an important regulation role in enhancing transgene expression, decreasing expression variation among individuals of different transformants and serving as the replication origin. Through these years, some MARBPs have been identified and characterized from humans, plants, animals and algae so far and the list is growing. Most of MARBPs exist in a co-repressor/co-activator complex and involve in chromosome folding, regulation of gene expression, influencing cell development and inducing cell apoptosis. This review covers recent advances that have contributed to our understanding of MARBPs.

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Year:  2010        PMID: 20174991     DOI: 10.1007/s11033-010-0003-8

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  59 in total

Review 1.  MARs and MARBPs: key modulators of gene regulation and disease manifestation.

Authors:  Samit Chattopadhyay; Lakshminarasimhan Pavithra
Journal:  Subcell Biochem       Date:  2007

2.  MAF1, a novel plant protein interacting with matrix attachment region binding protein MFP1, is located at the nuclear envelope.

Authors:  F Gindullis; N J Peffer; I Meier
Journal:  Plant Cell       Date:  1999-09       Impact factor: 11.277

3.  Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro.

Authors:  F O Fackelmayer; K Dahm; A Renz; U Ramsperger; A Richter
Journal:  Eur J Biochem       Date:  1994-04-15

4.  DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter.

Authors:  Claire Girard-Reydet; Damien Grégoire; Yegor Vassetzky; Marcel Méchali
Journal:  Gene       Date:  2004-05-12       Impact factor: 3.688

5.  Hair defects and pup loss in mice with targeted deletion of the first cut repeat domain of the Cux/CDP homeoprotein gene.

Authors:  C Tufarelli; Y Fujiwara; D C Zappulla; E J Neufeld
Journal:  Dev Biol       Date:  1998-08-01       Impact factor: 3.582

6.  SMAR1 and Cux/CDP modulate chromatin and act as negative regulators of the TCRbeta enhancer (Ebeta).

Authors:  Ruchika Kaul-Ghanekar; Archana Jalota; L Pavithra; Philip Tucker; Samit Chattopadhyay
Journal:  Nucleic Acids Res       Date:  2004-09-15       Impact factor: 16.971

7.  Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S/MAR-DNA.

Authors:  A Renz; F O Fackelmayer
Journal:  Nucleic Acids Res       Date:  1996-03-01       Impact factor: 16.971

8.  Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells.

Authors:  P Pavan Kumar; Prabhat Kumar Purbey; Dyavar S Ravi; Debashis Mitra; Sanjeev Galande
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

9.  Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions.

Authors:  Y Adachi; E Käs; U K Laemmli
Journal:  EMBO J       Date:  1989-12-20       Impact factor: 11.598

10.  A novel member of the SAF (scaffold attachment factor)-box protein family inhibits gene expression and induces apoptosis.

Authors:  Ching Wan Chan; Youn-Bok Lee; James Uney; Andrea Flynn; Jonathan H Tobias; Michael Norman
Journal:  Biochem J       Date:  2007-11-01       Impact factor: 3.857

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  13 in total

1.  The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis.

Authors:  Ju Yun; Youn-Sung Kim; Jae-Hoon Jung; Pil Joon Seo; Chung-Mo Park
Journal:  J Biol Chem       Date:  2012-03-22       Impact factor: 5.157

2.  Chromatin-bound bacterial effector ankyrin A recruits histone deacetylase 1 and modifies host gene expression.

Authors:  Kristen E Rennoll-Bankert; Jose C Garcia-Garcia; Sara H Sinclair; J Stephen Dumler
Journal:  Cell Microbiol       Date:  2015-06-11       Impact factor: 3.715

Review 3.  Role of tissue-specific AT-rich DNA sequence-binding proteins in lymphocyte differentiation.

Authors:  Takafumi Yokota; Yuzuru Kanakura
Journal:  Int J Hematol       Date:  2014-06-18       Impact factor: 2.490

Review 4.  A scaffold for X chromosome inactivation.

Authors:  Anna Tattermusch; Neil Brockdorff
Journal:  Hum Genet       Date:  2011-06-10       Impact factor: 4.132

5.  Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity.

Authors:  Alexei A Sharov; Akira Nishiyama; Yulan Piao; Lina S Correa-Cerro; Tomokazu Amano; Marshall Thomas; Samir Mehta; Minoru S H Ko
Journal:  BMC Genomics       Date:  2011-02-09       Impact factor: 3.969

6.  Regulatory Elements in Vectors for Efficient Generation of Cell Lines Producing Target Proteins.

Authors:  O Maksimenko; N B Gasanov; P Georgiev
Journal:  Acta Naturae       Date:  2015 Jul-Sep       Impact factor: 1.845

Review 7.  Relationship between DNA replication and the nuclear matrix.

Authors:  Rosemary H C Wilson; Dawn Coverley
Journal:  Genes Cells       Date:  2012-11-08       Impact factor: 1.891

8.  SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster.

Authors:  Jinumary Mathai; Smriti P K Mittal; Aftab Alam; Payal Ranade; Devraj Mogare; Sonal Patel; Smita Saxena; Suvankar Ghorai; Abhijeet P Kulkarni; Samit Chattopadhyay
Journal:  Sci Rep       Date:  2016-09-27       Impact factor: 4.379

Review 9.  From Gene to Protein-How Bacterial Virulence Factors Manipulate Host Gene Expression During Infection.

Authors:  Lea Denzer; Horst Schroten; Christian Schwerk
Journal:  Int J Mol Sci       Date:  2020-05-25       Impact factor: 5.923

10.  The IS2 Element Improves Transcription Efficiency of Integration-Deficient Lentiviral Vector Episomes.

Authors:  Sabina Sánchez-Hernández; Alejandra Gutierrez-Guerrero; Rocío Martín-Guerra; Marina Cortijo-Gutierrez; María Tristán-Manzano; Sandra Rodriguez-Perales; Laura Sanchez; Jose Luis Garcia-Perez; Jesus Chato-Astrain; Ricardo Fernandez-Valades; Ana Belén Carrillo-Galvez; Per Anderson; Rosa Montes; Pedro J Real; Francisco Martin; Karim Benabdellah
Journal:  Mol Ther Nucleic Acids       Date:  2018-08-18       Impact factor: 8.886

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