Literature DB >> 2017367

Genomic fingerprints produced by PCR with consensus tRNA gene primers.

J Welsh1, M McClelland.   

Abstract

The polymerase chain reaction using only a single 'consensus' tRNA gene primer, or a pair of primers facing outward from tRNA genes, amplifies a set of DNA fragments in bacterial, plant and animal genomic DNAs. Presumably, these PCR fingerprints are mainly derived from the regions between closely linked tRNA genes. The pattern of the PCR products is determined by which genomes and which primer(s) are used. Genomic fingerprints are largely conserved within a species and, in bacteria, most products in the fingerprint are conserved between closely related species. Thus, PCR with tRNA gene consensus primers helps to identify species and genera.

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Year:  1991        PMID: 2017367      PMCID: PMC333722          DOI: 10.1093/nar/19.4.861

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

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Authors:  O W McBride; I L Pirtle; R M Pirtle
Journal:  Genomics       Date:  1989-10       Impact factor: 5.736

Review 2.  Structure and organization of genes for transfer ribonucleic acid in Bacillus subtilis.

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Journal:  Microbiol Rev       Date:  1985-03

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Journal:  FEMS Microbiol Immunol       Date:  1989-12

4.  Rapid isolation of DNA probes within specific chromosome regions by interspersed repetitive sequence polymerase chain reaction.

Authors:  S A Ledbetter; D L Nelson; S T Warren; D H Ledbetter
Journal:  Genomics       Date:  1990-03       Impact factor: 5.736

5.  Alu polymerase chain reaction: a method for rapid isolation of human-specific sequences from complex DNA sources.

Authors:  D L Nelson; S A Ledbetter; L Corbo; M F Victoria; R Ramírez-Solis; T D Webster; D H Ledbetter; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

6.  Structure and organization of the two tRNATyr gene clusters on the E. coli chromosome.

Authors:  J J Rossi; A Landy
Journal:  Cell       Date:  1979-03       Impact factor: 41.582

Review 7.  Natural variation in the genetic code.

Authors:  T D Fox
Journal:  Annu Rev Genet       Date:  1987       Impact factor: 16.830

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Authors:  M J Rogers; A A Steinmetz; R T Walker
Journal:  Isr J Med Sci       Date:  1984-09

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Authors:  W E Kloos
Journal:  Annu Rev Microbiol       Date:  1980       Impact factor: 15.500

10.  Fingerprinting genomes using PCR with arbitrary primers.

Authors:  J Welsh; M McClelland
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

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  54 in total

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Authors:  M C Claros; Z C Claros; Y J Tang; S H Cohen; J Silva; E J Goldstein; A C Rodloff
Journal:  J Clin Microbiol       Date:  2000-05       Impact factor: 5.948

2.  Length polymorphisms in tRNA intergenic spacers detected by using the polymerase chain reaction can distinguish streptococcal strains and species.

Authors:  M McClelland; C Petersen; J Welsh
Journal:  J Clin Microbiol       Date:  1992-06       Impact factor: 5.948

3.  Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA.

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Journal:  J Clin Microbiol       Date:  1992-12       Impact factor: 5.948

4.  Evaluation of tRNA gene PCR for identification of mollicutes.

Authors:  Tim Stakenborg; Jo Vicca; Rita Verhelst; Patrick Butaye; Dominiek Maes; Anne Naessens; Geert Claeys; Catharine De Ganck; Freddy Haesebrouck; Mario Vaneechoutte
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

5.  Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria.

Authors:  F J de Bruijn
Journal:  Appl Environ Microbiol       Date:  1992-07       Impact factor: 4.792

6.  Rapid and accurate identification of Staphylococcus species by tRNA intergenic spacer length polymorphism analysis.

Authors:  N Maes; Y De Gheldre; R De Ryck; M Vaneechoutte; H Meugnier; J Etienne; M J Struelens
Journal:  J Clin Microbiol       Date:  1997-10       Impact factor: 5.948

7.  Parentage determination in maize hybrids using the arbitrarily primed polymerase chain reaction (AP-PCR).

Authors:  J Welsh; R J Honeycutt; M McClelland; B W Sobral
Journal:  Theor Appl Genet       Date:  1991-07       Impact factor: 5.699

8.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

9.  Use of homoduplex ribosomal DNA spacer amplification products and heteroduplex cross-hybridization products in the identification of Salmonella serovars.

Authors:  M A Jensen; R J Hubner
Journal:  Appl Environ Microbiol       Date:  1996-08       Impact factor: 4.792

10.  First report on the occurrence of 'Helicobacter heilmannii' in the stomach of rabbits.

Authors:  K Van den Bulck; M Baele; K Hermans; R Ducatelle; F Haesebrouck; A Decostere
Journal:  Vet Res Commun       Date:  2005-05       Impact factor: 2.459

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