Literature DB >> 20167470

Imaging approach for monitoring cellular metabolites and ions using genetically encoded biosensors.

Sakiko Okumoto1.   

Abstract

The spatiotemporal patterns of ion and metabolite levels in living cells are important in understanding signal transduction and metabolite flux. Imaging approaches using genetically encoded sensors are ideal for detecting such molecule dynamics, which are hard to capture otherwise. Recent years have seen iterative improvements and evaluations of sensors, which in turn are starting to make applications in more challenging experimental settings possible. In this review, we will introduce recent progress made in the variety and properties of biosensors, and how biosensors are used for the measurement of metabolite and ion in live cells. The emerging field of applications, such as parallel imaging of two separate molecules, high-resolution transport studies and high-throughput screening using biosensors, will be discussed.

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Year:  2010        PMID: 20167470      PMCID: PMC2843770          DOI: 10.1016/j.copbio.2010.01.009

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  99 in total

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3.  Chapter 2: Molecular sensors based on fluorescence resonance energy transfer to visualize cellular dynamics.

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4.  A novel analytical method for in vivo phosphate tracking.

Authors:  Hong Gu; Sylvie Lalonde; Sakiko Okumoto; Loren L Looger; Anne Marie Scharff-Poulsen; Arthur R Grossman; Jens Kossmann; Iver Jakobsen; Wolf B Frommer
Journal:  FEBS Lett       Date:  2006-10-02       Impact factor: 4.124

5.  Fluorescent biosensor for quantitative real-time measurements of inositol 1,4,5-trisphosphate in single living cells.

Authors:  Akihiko Tanimura; Akihiro Nezu; Takao Morita; R James Turner; Yosuke Tojyo
Journal:  J Biol Chem       Date:  2004-07-22       Impact factor: 5.157

6.  Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips.

Authors:  Bhavna Chaudhuri; Friederike Hörmann; Sylvie Lalonde; Siobhan M Brady; David A Orlando; Philip Benfey; Wolf B Frommer
Journal:  Plant J       Date:  2008-09-18       Impact factor: 6.417

7.  Imaging large-scale neural activity with cellular resolution in awake, mobile mice.

Authors:  Daniel A Dombeck; Anton N Khabbaz; Forrest Collman; Thomas L Adelman; David W Tank
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

8.  GLUT1 and GLUT9 as major contributors to glucose influx in HepG2 cells identified by a high sensitivity intramolecular FRET glucose sensor.

Authors:  Hitomi Takanaga; Bhavna Chaudhuri; Wolf B Frommer
Journal:  Biochim Biophys Acta       Date:  2007-12-14

9.  A genetically encoded calcium indicator for chronic in vivo two-photon imaging.

Authors:  Marco Mank; Alexandre Ferrão Santos; Stephan Direnberger; Thomas D Mrsic-Flogel; Sonja B Hofer; Valentin Stein; Thomas Hendel; Dierk F Reiff; Christiaan Levelt; Alexander Borst; Tobias Bonhoeffer; Mark Hübener; Oliver Griesbeck
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

10.  Intracellular dynamics of hippocampal place cells during virtual navigation.

Authors:  Christopher D Harvey; Forrest Collman; Daniel A Dombeck; David W Tank
Journal:  Nature       Date:  2009-10-15       Impact factor: 49.962

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  21 in total

1.  The RootChip: an integrated microfluidic chip for plant science.

Authors:  Guido Grossmann; Woei-Jiun Guo; David W Ehrhardt; Wolf B Frommer; Rene V Sit; Stephen R Quake; Matthias Meier
Journal:  Plant Cell       Date:  2011-12-20       Impact factor: 11.277

2.  In vivo quantification of cell coupling in plants with different phloem-loading strategies.

Authors:  Johannes Liesche; Alexander Schulz
Journal:  Plant Physiol       Date:  2012-03-15       Impact factor: 8.340

3.  Visualization of synaptic inhibition with an optogenetic sensor developed by cell-free protein engineering automation.

Authors:  Joshua S Grimley; Li Li; Weina Wang; Lei Wen; Lorena S Beese; Homme W Hellinga; George J Augustine
Journal:  J Neurosci       Date:  2013-10-09       Impact factor: 6.167

4.  Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.

Authors:  Mingxu You; Jacob L Litke; Rigumula Wu; Samie R Jaffrey
Journal:  Cell Chem Biol       Date:  2019-02-14       Impact factor: 8.116

Review 5.  Role of green fluorescent proteins and their variants in development of FRET-based sensors.

Authors:  Neha Soleja; Ovais Manzoor; Imran Khan; Altaf Ahmad; Mohd Mohsin
Journal:  J Biosci       Date:  2018-09       Impact factor: 1.826

Review 6.  Exploring metabolic pathways and regulation through functional chemoproteomic and metabolomic platforms.

Authors:  Daniel Medina-Cleghorn; Daniel K Nomura
Journal:  Chem Biol       Date:  2014-09-18

7.  Glutamine flux imaging using genetically encoded sensors.

Authors:  Julien Besnard; Sakiko Okumoto
Journal:  J Vis Exp       Date:  2014-07-31       Impact factor: 1.355

8.  Genetically Encoded Ratiometric RNA-Based Sensors for Quantitative Imaging of Small Molecules in Living Cells.

Authors:  Rigumula Wu; Aruni P K K Karunanayake Mudiyanselage; Fatemeh Shafiei; Bin Zhao; Yousef Bagheri; Qikun Yu; Kathleen McAuliffe; Kewei Ren; Mingxu You
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-24       Impact factor: 15.336

Review 9.  In vivo biochemistry: applications for small molecule biosensors in plant biology.

Authors:  Alexander M Jones; Guido Grossmann; Jonas Åh Danielson; Davide Sosso; Li-Qing Chen; Cheng-Hsun Ho; Wolf B Frommer
Journal:  Curr Opin Plant Biol       Date:  2013-04-12       Impact factor: 7.834

10.  The Signaling State of Orange Carotenoid Protein.

Authors:  Eugene G Maksimov; Evgeny A Shirshin; Nikolai N Sluchanko; Dmitry V Zlenko; Evgenia Y Parshina; Georgy V Tsoraev; Konstantin E Klementiev; Gleb S Budylin; Franz-Josef Schmitt; Thomas Friedrich; Victor V Fadeev; Vladimir Z Paschenko; Andrew B Rubin
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

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