Literature DB >> 20165775

Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934.

Siewert J Marrink, Xavier Periole, D Peter Tieleman, Alex H de Vries.   

Abstract

Mesh：

Year:  2010        PMID： 20165775     DOI： 10.1039/b915293h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN： 1463-9076            Impact factor:   3.676


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  12 in total

1.  Characterization of a potent antimicrobial lipopeptide via coarse-grained molecular dynamics.

Authors:  Joshua N Horn; Jesse D Sengillo; Dejun Lin; Tod D Romo; Alan Grossfield
Journal:  Biochim Biophys Acta       Date:  2011-07-28

2.  Interaction mechanism between the focused ultrasound and lipid membrane at the molecular level.

Authors:  Viet Hoang Man; Mai Suan Li; Junmei Wang; Philippe Derreumaux; Phuong H Nguyen
Journal:  J Chem Phys       Date:  2019-06-07       Impact factor: 3.488

3.  The association of polar residues in the DAP12 homodimer: TOXCAT and molecular dynamics simulation studies.

Authors:  Peng Wei; Bo-Kai Zheng; Peng-Ru Guo; Toru Kawakami; Shi-Zhong Luo
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

4.  Critical residues and motifs for homodimerization of the first transmembrane domain of the plasma membrane glycoprotein CD36.

Authors:  Peng Wei; Fu-de Sun; Li-Min Zuo; Jing Qu; Peng Chen; Li-da Xu; Shi-Zhong Luo
Journal:  J Biol Chem       Date:  2017-03-23       Impact factor: 5.157

5.  Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class.

Authors:  Daniel L Parton; Jochen W Klingelhoefer; Mark S P Sansom
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

Review 6.  Beyond standard molecular dynamics: investigating the molecular mechanisms of G protein-coupled receptors with enhanced molecular dynamics methods.

Authors:  Jennifer M Johnston; Marta Filizola
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

7.  Virtual Screening for Dipeptide Aggregation: Toward Predictive Tools for Peptide Self-Assembly.

Authors:  Pim W J M Frederix; Rein V Ulijn; Neil T Hunt; Tell Tuttle
Journal:  J Phys Chem Lett       Date:  2011-09-02       Impact factor: 6.475

8.  Line-tension controlled mechanism for influenza fusion.

Authors:  Herre Jelger Risselada; Giovanni Marelli; Marc Fuhrmans; Yuliya G Smirnova; Helmut Grubmüller; Siewert Jan Marrink; Marcus Müller
Journal:  PLoS One       Date:  2012-06-28       Impact factor: 3.240

9.  Molecular dynamic simulation of the self-assembly of DAP12-NKG2C activating immunoreceptor complex.

Authors:  Peng Wei; Lida Xu; Cheng-Dong Li; Fu-De Sun; Long Chen; Tianwei Tan; Shi-Zhong Luo
Journal:  PLoS One       Date:  2014-08-22       Impact factor: 3.240

10.  Sidekick for Membrane Simulations: Automated Ensemble Molecular Dynamics Simulations of Transmembrane Helices.

Authors:  Benjamin A Hall; Khairul Bariyyah Abd Halim; Amanda Buyan; Beatrice Emmanouil; Mark S P Sansom
Journal:  J Chem Theory Comput       Date:  2014-05-13       Impact factor: 6.006
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