Literature DB >> 20161541

Python Environment for Bayesian Learning: Inferring the Structure of Bayesian Networks from Knowledge and Data.

Abhik Shah1, Peter Woolf.   

Abstract

In this paper, we introduce pebl, a Python library and application for learning Bayesian network structure from data and prior knowledge that provides features unmatched by alternative software packages: the ability to use interventional data, flexible specification of structural priors, modeling with hidden variables and exploitation of parallel processing.

Entities:  

Year:  2009        PMID: 20161541      PMCID: PMC2804996     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   3.654


  4 in total

1.  Inferring subnetworks from perturbed expression profiles.

Authors:  D Pe'er; A Regev; G Elidan; N Friedman
Journal:  Bioinformatics       Date:  2001       Impact factor: 6.937

2.  Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks.

Authors:  Seiya Imoto; Tomoyuki Higuchi; Takao Goto; Kousuke Tashiro; Satoru Kuhara; Satoru Miyano
Journal:  Proc IEEE Comput Soc Bioinform Conf       Date:  2003

3.  Discovery of causal relationships in a gene-regulation pathway from a mixture of experimental and observational DNA microarray data.

Authors:  C Yoo; V Thorsson; G F Cooper
Journal:  Pac Symp Biocomput       Date:  2002

4.  Bayesian network approach to cell signaling pathway modeling.

Authors:  Karen Sachs; David Gifford; Tommi Jaakkola; Peter Sorger; Douglas A Lauffenburger
Journal:  Sci STKE       Date:  2002-09-03
  4 in total
  5 in total

Review 1.  Systems biology data analysis methodology in pharmacogenomics.

Authors:  Andrei S Rodin; Grigoriy Gogoshin; Eric Boerwinkle
Journal:  Pharmacogenomics       Date:  2011-09       Impact factor: 2.533

2.  Effective connectivity analysis of fMRI and MEG data collected under identical paradigms.

Authors:  Sergey M Plis; Michael P Weisend; Eswar Damaraju; Tom Eichele; Andy Mayer; Vincent P Clark; Terran Lane; Vince D Calhoun
Journal:  Comput Biol Med       Date:  2011-05-17       Impact factor: 4.589

3.  Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks.

Authors:  Angel Alvarez; Peter J Woolf
Journal:  BMC Syst Biol       Date:  2011-05-27

4.  RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples.

Authors:  Angel Alvarez; Peter J Woolf
Journal:  BMC Bioinformatics       Date:  2011-06-17       Impact factor: 3.169

5.  A gene regulatory network for root epidermis cell differentiation in Arabidopsis.

Authors:  Angela Bruex; Raghunandan M Kainkaryam; Yana Wieckowski; Yeon Hee Kang; Christine Bernhardt; Yang Xia; Xiaohua Zheng; Jean Y Wang; Myeong Min Lee; Philip Benfey; Peter J Woolf; John Schiefelbein
Journal:  PLoS Genet       Date:  2012-01-12       Impact factor: 5.917

  5 in total

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