Literature DB >> 20161423

Calculation of Double-Quantum-Coherence Two-dimensional Spectra: Distance Measurements and Orientational Correlations.

Sushil K Misra1, Peter P Borbat, Jack H Freed.   

Abstract

The double quantum coherence (DQC) echo signal for two coupled nitroxides separated by distances ≳10 Å, is calculated rigorously for the six-pulse sequence. Successive application of six pulses on the initial density matrix, with appropriate inter-pulse time evolution and coherence pathway selection leaves only the coherent pathways of interest. The amplitude of the echo signal following the last π pulse can be used to obtain a one-dimensional dipolar spectrum (Pake doublet), and the echo envelope can be used to construct the two-dimensional DQC spectrum. The calculations are carried out using the product space spanned by the two electron-spin magnetic quantum numbers m(1), m(2) and the two nuclear-spin magnetic quantum numbers M(1), M(2), describing e.g. two coupled nitroxides in bilabeled proteins. The density matrix is subjected to a cascade of unitary transformations taking into account dipolar and electron exchange interactions during each pulse and during the evolution in the absence of a pulse. The unitary transformations use the eigensystem of the effective spin-Hamiltonians obtained by numerical matrix diagonalization. Simulations are carried out for a range of dipolar interactions, D, and microwave magnetic field strength B for both fixed and random orientations of the two (14)N (and (15)N) nitroxides. Relaxation effects were not included. Several examples of one- and two-dimensional Fourier transforms of the time domain signals vs. dipolar evolution and spin-echo envelope time variables are shown for illustration. Comparisons are made between 1D rigorous simulations and analytical approximations. The rigorous simulations presented here provide insights into DQC ESR spectroscopy, they serve as a standard to evaluate the results of approximate theories, and they can be employed to plan future DQC experiments.

Entities:  

Year:  2009        PMID: 20161423      PMCID: PMC2786184          DOI: 10.1007/s00723-009-0023-5

Source DB:  PubMed          Journal:  Appl Magn Reson        ISSN: 0937-9347            Impact factor:   0.831


  3 in total

1.  Measuring distances by pulsed dipolar ESR spectroscopy: spin-labeled histidine kinases.

Authors:  Peter P Borbat; Jack H Freed
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

Review 2.  Computer simulation of magnetic resonance spectra employing homotopy.

Authors:  K E Gates; M Griffin; G R Hanson; K Burrage
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

3.  Simulation of slow-motion CW EPR spectrum using stochastic Liouville equation for an electron spin coupled to two nuclei with arbitrary spins: matrix elements of the Liouville superoperator.

Authors:  Sushil K Misra
Journal:  J Magn Reson       Date:  2007-08-14       Impact factor: 2.229

  3 in total
  2 in total

1.  Pulsed EPR distance measurements in soluble proteins by site-directed spin labeling (SDSL).

Authors:  Ian Mitchelle S de Vera; Mandy E Blackburn; Luis Galiano; Gail E Fanucci
Journal:  Curr Protoc Protein Sci       Date:  2013-11-05

2.  Sensitive Cu2+-Cu2+ distance measurements in a protein-DNA complex by double-quantum coherence ESR.

Authors:  Sharon Ruthstein; Ming Ji; Preeti Mehta; Linda Jen-Jacobson; Sunil Saxena
Journal:  J Phys Chem B       Date:  2013-05-10       Impact factor: 2.991

  2 in total

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