Literature DB >> 20161040

A resolution measure for three-dimensional microscopy.

Jerry Chao1, Sripad Ram, Anish V Abraham, E Sally Ward, Raimund J Ober.   

Abstract

A three-dimensional (3D) resolution measure for the conventional optical microscope is introduced which overcomes the drawbacks of the classical 3D (axial) resolution limit. Formulated within the context of a parameter estimation problem and based on the Cramer-Rao lower bound, this 3D resolution measure indicates the accuracy with which a given distance between two objects in 3D space can be determined from the acquired image. It predicts that, given enough photons from the objects of interest, arbitrarily small distances of separation can be estimated with prespecified accuracy. Using simulated images of point source pairs, we show that the maximum likelihood estimator is capable of attaining the accuracy predicted by the resolution measure. We also demonstrate how different factors, such as extraneous noise sources and the spatial orientation of the imaged object pair, can affect the accuracy with which a given distance of separation can be determined.

Entities:  

Year:  2009        PMID: 20161040      PMCID: PMC2753980          DOI: 10.1016/j.optcom.2009.01.062

Source DB:  PubMed          Journal:  Opt Commun        ISSN: 0030-4018            Impact factor:   2.310


  12 in total

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Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
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2.  How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?

Authors:  Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2005

Review 3.  Breaking the resolution limit in light microscopy.

Authors:  Rainer Heintzmann; Gabriella Ficz
Journal:  Methods Cell Biol       Date:  2007       Impact factor: 1.441

4.  Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy.

Authors:  Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-01       Impact factor: 11.205

Review 5.  Intracellular objects tracking.

Authors:  Yannis Kalaidzidis
Journal:  Eur J Cell Biol       Date:  2007-07-23       Impact factor: 4.492

6.  Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy.

Authors:  S F Gibson; F Lanni
Journal:  J Opt Soc Am A       Date:  1992-01       Impact factor: 2.129

7.  Electromagnetic diffraction of light focused through a stratified medium.

Authors:  P Török; P Varga
Journal:  Appl Opt       Date:  1997-04-10       Impact factor: 1.980

8.  Superresolution by localization of quantum dots using blinking statistics.

Authors:  Keith Lidke; Bernd Rieger; Thomas Jovin; Rainer Heintzmann
Journal:  Opt Express       Date:  2005-09-05       Impact factor: 3.894

Review 9.  Do-it-yourself guide: how to use the modern single-molecule toolkit.

Authors:  Nils G Walter; Cheng-Yen Huang; Anthony J Manzo; Mohamed A Sobhy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

10.  Superresolution and convergence properties of the expectation-maximization algorithm for maximum-likelihood deconvolution of incoherent images.

Authors:  J A Conchello
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  1998-10       Impact factor: 2.129

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  9 in total

1.  Localization accuracy in single molecule microscopy using electron-multiplying charge-coupled device cameras.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-03-15

2.  A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure.

Authors:  Jerry Chao; Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2009-12-21       Impact factor: 3.894

3.  A 3D Resolution Measure for Optical Microscopy.

Authors:  Jerry Chao; Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009

4.  3D single molecule tracking of quantum-dot labeled antibody molecules using multifocal plane microscopy.

Authors:  Sripad Ram; Prashant Prabhat; Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-02-17

5.  Fisher information theory for parameter estimation in single molecule microscopy: tutorial.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2016-07-01       Impact factor: 2.129

6.  3D single molecule tracking and superresolution microscopy using multifocal plane microscopy.

Authors:  Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012-12-31

7.  A stochastic analysis of distance estimation approaches in single molecule microscopy - quantifying the resolution limits of photon-limited imaging systems.

Authors:  Sripad Ram; E Sally Ward; Raimund J Ober
Journal:  Multidimens Syst Signal Process       Date:  2013-09       Impact factor: 2.030

8.  Improved single particle localization accuracy with dual objective multifocal plane microscopy.

Authors:  Sripad Ram; Prashant Prabhat; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2009-04-13       Impact factor: 3.894

9.  Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

Authors:  Guy Nir; Irene Farabella; Cynthia Pérez Estrada; Carl G Ebeling; Brian J Beliveau; Hiroshi M Sasaki; S Dean Lee; Son C Nguyen; Ruth B McCole; Shyamtanu Chattoraj; Jelena Erceg; Jumana AlHaj Abed; Nuno M C Martins; Huy Q Nguyen; Mohammed A Hannan; Sheikh Russell; Neva C Durand; Suhas S P Rao; Jocelyn Y Kishi; Paula Soler-Vila; Michele Di Pierro; José N Onuchic; Steven P Callahan; John M Schreiner; Jeff A Stuckey; Peng Yin; Erez Lieberman Aiden; Marc A Marti-Renom; C-Ting Wu
Journal:  PLoS Genet       Date:  2018-12-26       Impact factor: 5.917

  9 in total

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