Literature DB >> 20160714

Methylation status of genes in non-neoplastic mucosa from patients with ulcerative colitis-associated colorectal cancer.

Megan M Garrity-Park1, Edward V Loftus, William J Sandborn, Sandra C Bryant, Thomas C Smyrk.   

Abstract

OBJECTIVES: Patients with ulcerative colitis (UC) are at increased risk for developing colorectal cancer (CRC). Surveillance in this at-risk population remains challenging. We assessed the methylation status of genes in the non-neoplastic mucosa of UC-CRC patients and controls to identify potential biomarkers of CRC.
METHODS: We evaluated the methylation status of 10 genes (p16, p14, runt-related transcript factor-3 (RUNX3), cyclooxygenase-2 (COX-2), E-cadherin, methylated-in-tumor-1 (MINT1), MINT31, HPP1, estrogen receptor, SLC5A8) in UC-CRC tumors and non-neoplastic sections from both UC-CRC cases and UC controls (n=114 for each) using methylation-specific PCR.
RESULTS: Amplification was successful for 96 UC controls, 83 tumors, and 66 non-adjacent, non-neoplastic samples. The prevalence of methylation was significantly greater in UC-CRC tumors for p16, RUNX3, MINT1, MINT31, and HPP1. Methylation of COX-2 and E-cadherin was greater in UC controls than in tumors. Univariate testing of these genes using non-adjacent, non-neoplastic sections from UC-CRC cases indicated that associations between p16, RUNX3, MINT1, MINT31, E-cadherin, and COX-2 and UC-CRC remained significant. In multivariable analysis of the six genes, only RUNX3, MINT1, and COX-2 remained significantly associated with the UC-CRC cases (odds ratio=12.6, 9.0, and 0.2, respectively). The results remained unaffected by the presence of PSC or severity of inflammation. Logistic regression modeling with the three genes showed interactions that increased the odds ratio for each gene.
CONCLUSIONS: RUNX3, MINT1, and COX-2 are potential biomarkers for detecting the presence of CRC in patients with UC. These genes should be evaluated as biomarkers for colorectal dysplasia.

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Year:  2010        PMID: 20160714     DOI: 10.1038/ajg.2010.22

Source DB:  PubMed          Journal:  Am J Gastroenterol        ISSN: 0002-9270            Impact factor:   10.864


  29 in total

1.  Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells.

Authors:  Alan Barnicle; Cathal Seoighe; Aaron Golden; John M Greally; Laurence J Egan
Journal:  Physiol Genomics       Date:  2016-01-26       Impact factor: 3.107

2.  Hypermethylation of ITGA4, TFPI2 and VIMENTIN promoters is increased in inflamed colon tissue: putative risk markers for colitis-associated cancer.

Authors:  Christian Gerecke; Bettina Scholtka; Yvonne Löwenstein; Isabel Fait; Uwe Gottschalk; Dorothee Rogoll; Ralph Melcher; Burkhard Kleuser
Journal:  J Cancer Res Clin Oncol       Date:  2015-04-23       Impact factor: 4.553

Review 3.  Genomic and molecular alterations in human inflammatory bowel disease-associated colorectal cancer.

Authors:  Marie Muller; Franck Hansmannel; Djesia Arnone; Myriam Choukour; Ndeye Coumba Ndiaye; Tunay Kokten; Rémi Houlgatte; Laurent Peyrin-Biroulet
Journal:  United European Gastroenterol J       Date:  2020-04-08       Impact factor: 4.623

4.  Association between polymorphisms in the XRCC1 and GST genes, and CpG island methylation status in colonic mucosa in ulcerative colitis.

Authors:  Tomomitsu Tahara; Tomoyuki Shibata; Masakatsu Nakamura; Masaaki Okubo; Hiromi Yamashita; Daisuke Yoshioka; Joh Yonemura; Ichiro Hirata; Tomiyasu Arisawa
Journal:  Virchows Arch       Date:  2011-01-14       Impact factor: 4.064

5.  Stool DNA testing for cancer surveillance in inflammatory bowel disease: an early view.

Authors:  John B Kisiel; David A Ahlquist
Journal:  Therap Adv Gastroenterol       Date:  2013-09       Impact factor: 4.409

6.  Case-control study of candidate gene methylation and adenomatous polyp formation.

Authors:  M Alexander; J B Burch; S E Steck; C-F Chen; T G Hurley; P Cavicchia; N Shivappa; J Guess; H Zhang; S D Youngstedt; K E Creek; S Lloyd; K Jones; J R Hébert
Journal:  Int J Colorectal Dis       Date:  2016-10-22       Impact factor: 2.571

7.  Relationship between methylation and colonic inflammation in inflammatory bowel disease.

Authors:  Triana Lobatón; Daniel Azuara; Francisco Rodríguez-Moranta; Carolina Loayza; Xavier Sanjuan; Javier de Oca; Ana Fernández-Robles; Jordi Guardiola; Gabriel Capellá
Journal:  World J Gastroenterol       Date:  2014-08-14       Impact factor: 5.742

Review 8.  Role of SMAD proteins in colitis-associated cancer: from known to the unknown.

Authors:  P Chandrasinghe; B Cereser; M Moorghen; I Al Bakir; N Tabassum; A Hart; J Stebbing; J Warusavitarne
Journal:  Oncogene       Date:  2017-09-04       Impact factor: 9.867

9.  Stool DNA testing for the detection of colorectal neoplasia in patients with inflammatory bowel disease.

Authors:  J B Kisiel; T C Yab; F T Nazer Hussain; W R Taylor; M M Garrity-Park; W J Sandborn; E V Loftus; B G Wolff; T C Smyrk; S H Itzkowitz; D T Rubin; H Zou; D W Mahoney; D A Ahlquist
Journal:  Aliment Pharmacol Ther       Date:  2013-01-24       Impact factor: 8.171

10.  Methylated eyes absent 4 (EYA4) gene promotor in non-neoplastic mucosa of ulcerative colitis patients with colorectal cancer: evidence for a field effect.

Authors:  John B Kisiel; Megan M Garrity-Park; William R Taylor; Thomas C Smyrk; David A Ahlquist
Journal:  Inflamm Bowel Dis       Date:  2013-09       Impact factor: 5.325

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