Literature DB >> 20157335

Taming the next-gen beast.

Stephen Bentley1.   

Abstract

This month's Genome Watch discusses how alternative approaches to using second-generation sequencing technologies are powerful tools for the analysis of common pathogenic bacteria.

Mesh：

Year:  2010        PMID： 20157335     DOI： 10.1038/nrmicro2322

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  5 in total

1.  Evolution of MRSA during hospital transmission and intercontinental spread.

Authors:  Simon R Harris; Edward J Feil; Matthew T G Holden; Michael A Quail; Emma K Nickerson; Narisara Chantratita; Susana Gardete; Ana Tavares; Nick Day; Jodi A Lindsay; Jonathan D Edgeworth; Hermínia de Lencastre; Julian Parkhill; Sharon J Peacock; Stephen D Bentley
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

2.  Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants.

Authors:  Gemma C Langridge; Minh-Duy Phan; Daniel J Turner; Timothy T Perkins; Leopold Parts; Jana Haase; Ian Charles; Duncan J Maskell; Sarah E Peters; Gordon Dougan; John Wain; Julian Parkhill; A Keith Turner
Journal:  Genome Res       Date:  2009-10-13       Impact factor: 9.043

3.  Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung.

Authors:  Jeffrey D Gawronski; Sandy M S Wong; Georgia Giannoukos; Doyle V Ward; Brian J Akerley
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-04       Impact factor: 11.205

4.  Identifying genetic determinants needed to establish a human gut symbiont in its habitat.

Authors:  Andrew L Goodman; Nathan P McNulty; Yue Zhao; Douglas Leip; Robi D Mitra; Catherine A Lozupone; Rob Knight; Jeffrey I Gordon
Journal:  Cell Host Microbe       Date:  2009-09-17       Impact factor: 21.023

5.  Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

Authors:  Tim van Opijnen; Kip L Bodi; Andrew Camilli
Journal:  Nat Methods       Date:  2009-09-20       Impact factor: 28.547
  5 in total
  4 in total

1.  Analysis of quality raw data of second generation sequencers with Quality Assessment Software.

Authors:  Rommel Tj Ramos; Adriana R Carneiro; Jan Baumbach; Vasco Azevedo; Maria Pc Schneider; Artur Silva
Journal:  BMC Res Notes       Date:  2011-04-18

2.  Genomic variability of monkeypox virus among humans, Democratic Republic of the Congo.

Authors:  Jeffrey R Kugelman; Sara C Johnston; Prime M Mulembakani; Neville Kisalu; Michael S Lee; Galina Koroleva; Sarah E McCarthy; Marie C Gestole; Nathan D Wolfe; Joseph N Fair; Bradley S Schneider; Linda L Wright; John Huggins; Chris A Whitehouse; Emile Okitolonda Wemakoy; Jean Jacques Muyembe-Tamfum; Lisa E Hensley; Gustavo F Palacios; Anne W Rimoin
Journal:  Emerg Infect Dis       Date:  2014-02       Impact factor: 6.883

3.  Development and validation of an rDNA operon based primer walking strategy applicable to de novo bacterial genome finishing.

Authors:  Alexander W Eastman; Ze-Chun Yuan
Journal:  Front Microbiol       Date:  2015-01-21       Impact factor: 5.640

4.  Suffix tree searcher: exploration of common substrings in large DNA sequence sets.

Authors:  David Minkley; Michael J Whitney; Song-Han Lin; Marina G Barsky; Chris Kelly; Chris Upton
Journal:  BMC Res Notes       Date:  2014-07-23
  4 in total

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