| Literature DB >> 20157327 |
N Andersson1, L Strandberg, S Nilsson, S Adamovic, M K Karlsson, O Ljunggren, D Mellström, N E Lane, J M Zmuda, C Nielsen, E Orwoll, M Lorentzon, C Ohlsson, J-O Jansson.
Abstract
CONTEXT: Regulation of fat mass appears to be associated with immune functions. Studies of knockout mice show that endogenous interleukin (IL)-6 can suppress mature-onset obesity.Entities:
Mesh:
Substances:
Year: 2010 PMID: 20157327 PMCID: PMC2885503 DOI: 10.1038/ijo.2010.27
Source DB: PubMed Journal: Int J Obes (Lond) ISSN: 0307-0565 Impact factor: 5.095
Characteristics of the study subjects
Table 1. Values are given as mean ± SD; n = number of subjects with both successful genotyping and available fat parameters.
| Variables | GOOD | MrOS Sweden | MrOS US |
|---|---|---|---|
| Age (yr) | 18.9 ± 0.6 | 75.4 ± 3.2 | 73.7 ± 5.9 |
| Height (cm) | 181.4 ± 6.8 | 174.8 ± 6.5 | 174.1 ± 6.8 |
| Weight (kg) | 73.8 ± 11.9 | 80.6 ± 11.8 | 83.1 ± 13.2 |
| Total fat (kg) | 13.3 ± 8.0 | 22.1 ± 7.6 | 21.8 ± 7.1 |
| Total lean tissue (kg) | 57.4 ± 6.2 | 55.5 ± 6.8 | 58.0 ± 7.4 |
| BMI (kg/m2) | 22.4 ± 3.2 | 26.4 ± 3.5 | 27.4 ± 3.8 |
| Trunk fat (kg) | 6.8 ± 4.3 | 12.8 ± 5.0 | 12.3 ± 4.3 |
| Arm fat (kg) | 0.56 ± 0.41 | 1.12 ± 0.41 | 1.23 ± 0.49 |
| Leg fat (kg) | 2.5 ± 1.4 | 3.1 ± 1.1 | 3.0 ± 1.1 |
| Total Fat (%) | 17.2 ± 7.4 | 27.9 ± 6.9 | 26.2 ± 5.4 |
Allele and genotype frequencies of SNPs in the IL6 gene (GOOD cohort)
Table 2. 1 - major allele; 2 - minor allele; n = number of subjects carrying the genotype; 11 - homozygotes for the major allele; 22 - homozygotes for the minor allele; HWE - Hardy-Weinberg equilibrium; IL - interleukin
| Marker | Gene | Localization | Allele frequency | Genotype frequency | ||||
|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 11 | 12 | 22 | ||||
| (%) | (%) | n (%) | n (%) | n (%) | ||||
| rs7801617 | 5′ near gene | 91 (G) | 9 (A) | 867 (83) | 169 (16) | 12 (1) | 0.25 | |
| rs1880242 | 5′ near gene | 54 (G) | 46 (T) | 302 (29) | 525 (50) | 218 (21) | 0.28 | |
| rs2056576 | 5′ near gene | 74 (C) | 26 (T) | 581 (55) | 387 (37) | 80 (8) | 0.17 | |
| rs1800795 | 5′ near gene | 54 (C) | 46 (G) | 312 (30) | 496 (48) | 235 (23) | 0.16 | |
| rs2069840 | intron 3 | 70 (C) | 30 (G) | 525 (50) | 424 (40) | 100 (10) | 0.29 | |
| rs2069861 | 3′ near gene | 89 (C) | 11 (T) | 832 (79) | 207 (20) | 8 (1) | 0.21 | |
| rs10242595 | 3′ near gene | 71 (G) | 29 (A) | 537 (51) | 424 (40) | 88 (8) | 0.74 | |
| rs11766273 | 3′ near gene | 92 (G) | 8 (A) | 881 (84) | 162 (15) | 6 (1) | 0.62 | |
Figure 1The LD pattern of the interleukin 6 gene (IL6, also known as interferon, beta 2) based on results from tag-SNP genotyping in the GOOD cohort. The location of each tested SNP along the chromosome is indicated on top and the number in each square indicates the magnitude of linkage disequilibrium (LD) expressed as D′ between respective pairs of SNPs. Color scheme: bright red squares indicate strong LD (D′≈1); squares colored by lighter shades of pink indicate weaker LD; white color indicates very weak or no LD (D′≈0). Modified from Haploview (37).
SNPs in the IL6 gene in relation to total fat mass in GOOD
Table 3. The association between individual SNPs in the IL6 gene and total fat mass. P-values are calculated on log-transformed response (total fat mass measured by DXA) using linear regression under an additive model. P-values are specified for an unadjusted model and for the model adjusted for tissue lean mass and present physical activity (hours per week) as done previously (36).
| SNP ID | Minor allele | ||||
|---|---|---|---|---|---|
| Effect size* | |||||
| rs7801617 | A | 0.19 | -0.080 (0.072) | 0.26 | 0.89 |
| rs1880242 | T | 0.55 | -0.020 (0.043) | 0.63 | 0.99 |
| rs2056576 | T | 0.44 | 0.033 (0.047) | 0.48 | 0.99 |
| rs1800795 | C | 0.25 | 0.039 (0.041) | 0.34 | 0.86 |
| rs2069840 | G | 0.06 | 0.082 (0.045) | 0.07 | 0.48 |
| rs2069861 | T | 0.93 | -0.027 (0.070) | 0.96 | 1 |
| rs10242595 | A | 0.01 | -0.109 (0.011) | 0.02 | 0.19 |
| rs11766273 | A | 0.77 | -0.014 (0.087) | 0.86 | 1 |
Effect size (regression coefficient) and SEM values are expressed in SD units per additional minor allele and presented for the adjusted model P is corrected for multiple testing by permutation test.
Associations of rs10242595 with total fat mass in men
Table 4. Linear regression analysis of association between rs10242595 and total body fat mass in young men (GOOD) and elderly men (MrOS Sweden and MrOS US). n = number of subjects with both successful genotyping and available data on body composition. P-values are calculated on log-transformed response (total fat mass measured by DXA) using linear regression under an additive model. Model I is only adjusted for cohort, race and site, and Model II is adjusted for cohort, race, site, age, current physical activity, current smoking status, height, and total body lean mass. The covariates differed between calculations, as they were corrected for race in the whole MrOS US study, for site in the MrOS study and when cohorts were combined and for cohort when cohorts were combined. Other differences in covariates:
| Cohort | n | A allele frequency | |||
|---|---|---|---|---|---|
| Effect size | |||||
| GOOD | 1049 | 0.29 | 0.01 | -0.111 (0.046) | 0.02 |
| MrOS Sweden | 2738 | 0.25 | 0.08 | -0.044 (0.027) | 0.10 |
| MrOS US | 5611 | 0.35 | 0.08 | -0.037 (0.017) | 0.03 |
| 5041 | 0.32 | 0.03 | -0.047 (0.018) | 0.009 | |
| 198 | 0.49 | 0.13 | 0.126 (0.101) | 0.21 | |
| 180 | 0.93 | 0.06 | -0.297 (0.160) | 0.07 | |
| 116 | 0.48 | 0.43 | 0.065 (0.105) | 0.53 | |
| Combined elderly men | 7779 | 0.29 | 0.005 | -0.046 (0.015) | 0.002 |
| All cohorts combined | 8927 | 0.29 | 0.001 | -0.052 (0.016) | 0.0002 |
Physical activity (hours per week).
Physical activity (km/day).
Physical activity not included as a covariate.
Effect size (regression coefficient) and SEM values are expressed as change in SD units per additional A (minor) allele and presented for the Model II.
IL6 rs10242595 in relation to fat parameters in Caucasian elderly men from the combined MrOS cohorts
Table 5. Linear regression analysis of the associations between rs10242595 SNP and fat parameters in Caucasian elderly men from the combined MrOS cohorts. Data are mean with confidence intervals (CI). P-values are calculated on log-transformed response (tissue fat mass measured by DXA) using linear regression under an additive model. Model I is adjusted for cohort and site, and Model II is adjusted for cohort, site, age, current physical activity, current smoking status, height, and total body lean mass.
| Variables | |||
|---|---|---|---|
| Effect size | |||
| Total fat (kg) | 0.005 | -0.046 (-0.075 – -0.016) | 0.002 |
| Total fat (%) | 0.006 | -0.049 (-0.081 – -0.016) | 0.003 |
| Weight (kg) | 0.02 | -0.029 (-0.046 – -0.011) | 0.002 |
| BMI (kg/m2) | 0.8 | -0.033 (-0.053 – -0.015) | 0.001 |
| Lean body mass (kg) | 0.5 | 0.031 (0.005 – 0.056) | 0.02 |
| Trunk fat (kg) | 0.01 | -0.041 (-0.070 – -0.011) | 0.007 |
| Arm fat (kg) | 0.0002 | -0.065 (-0.095 – -0.034) | 0.00003 |
| Leg fat (kg) | 0.006 | -0.041 (-0.071 – -0.010) | 0.009 |
Lean tissue mass not included as a covariate.
Effect size (regression coefficient) and SEM values are expressed as change in SD units (CI) per additional A (minor) allele and presented for the P2 model.