| Literature DB >> 20150980 |
Zoran B Redzic1, Slava A Malatiali, Danica Grujicic, Aleksandra J Isakovic.
Abstract
BACKGROUND: Human equilibrative nucleoside transporters (hENTs) 1-3 and human concentrative nucleoside transporters (hCNTs) 1-3 in the human choroid plexus (hCP) play a role in the homeostasis of adenosine and other naturally occurring nucleosides in the brain; in addition, hENT1, hENT2 and hCNT3 mediate membrane transport of nucleoside reverse transcriptase inhibitors that could be used to treat HIV infection, 3'-azido-3'-deoxythymidine, 2'3'-dideoxycytidine and 2'3'-dideoxyinosine. This study aimed to explore the expression levels and functional activities of hENTs 1-3 and hCNTs 1-3 in human choroid plexus.Entities:
Year: 2010 PMID: 20150980 PMCID: PMC2820436 DOI: 10.1186/1743-8454-7-2
Source DB: PubMed Journal: Cerebrospinal Fluid Res ISSN: 1743-8454
Primer sequences and the expected size of the PCR products.
| Gene of interest | NCBI Accession number | Position in the mRNA | Amplicon length | Amplicon sequence | Probe sequence |
|---|---|---|---|---|---|
| hENT1 | NM_001078174 | 358-433 | 75 | ACAGATACAAAGCGTCT GGCTT ATCTTCTTCATGCTG GGTCTGGGAACGCTGCTC CCGTGGAATTTTTTCATGA | CAGCCTCAGGACAGATACAAAGCTG |
| hENT2 | NM_001532 | 1290-1400 | 110 | CAGACGAGGACAGCCGG CTGCTGCCCCTGCTGGTCTGCCTGCGGTTCCTGTTCGTGCCCCTCTTCATGCTGTGCCACGTGCCCCAGAGGTCCC GGCTGCCCATCCTCTTCC | CTTACTTCCTGTGGCCAGACGAGGA |
| hENT3 | NM_018344 | 827 - 909 | 82 | CCAGGTACTACATGAGGCCTGTTCTTGCGGCCCATGTGTTTTCTGGTGAAGAGGAGCTTCCCCAGGACTCCCTCAGTGCCCC | GGAGTATGCCAGGTACTACATGAGG |
| hCNT1 | NM_201651 | 391 - 463 | 72 | GAACCTGCAGCCAGCCCTGA GAGCCAGAAGCTTCTG CAGGGAGCACATGCAGCTGTTTCGATGGATCGGCAC | TCCAGATGGAGGAACCTGCAGCCAG |
| hCNT2 | NM_004212 | 236 - 301 | 65 | TCGGTGGCCTTTCAGCAAAGCAAGAAGTTTCTGCAAAACACACGCCAGATTGTTCAAGAAGATCC | ACTTACCAGAGGAGGAGTCGGTGGC |
| hCNT3 | NM_022127 | 617-718 | 101 | GGTG ATCTGGAGCTCCCT GGTCCT AGCAGTTATTTTCTG GTTGGCCTTTGACACTGCCAAATTGGGTCAACAGCAGCTGGTGTCCTTCGGTGGG CTCATAA | CTGGCTGAAGTGGGTGATCTGGAGC |
| 18 S | X03205 | 609-796 | 187 | G GTGCCAGCAGCCGCG GTAATTCCAGCTCCAATAGCGTATA TTAAAGTTGCTGCA GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGA GCCACCGCCCGTCC CCGCCC CTTGCCTCTCGG CGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGGGGC CCGAAG | ACTTGCTCTTGGACAGGAACCAGGG |
Figure 1Validation of the method for fluorescence-based quantitative real-time PCR (qPCR). Titration curves were obtained by using cDNA to create a series of dilutions, from 1× (no dilution) to 64 × dilution. Then the qPCR was run and log dilutions plotted against the obtained quantification cycle (Cq) values. Each Cq value was estimated as an average from 2 replicates and each point in the Figure represents mean ± SE from 3 separate cDNA samples. The linearity of the plots shows the equal amplification of the assay over a range of input DNA concentrations. These data were also used to estimate the efficiency (E) of the reaction for each gene of interest.
The fluorescence-based quantitative real-time PCR data for the reference gene and genes of interest in human choroid plexus.
| Cq ± SD | E-Cq ± SD (× 109) | |
|---|---|---|
| 18 S | 13.97 ± 0.31 | 58123 ± 12920 |
| hENT1 | 29.00 ± 0.52 | 5.23 ± 1.79 |
| hENT2 | 28.08 ± 0.30 | 3.07 ± 0.62 |
| hENT3 | 19.17 ± 0.59 | 1403 ± 494 |
| hCNT1 | > 40 | - |
| hCNT2 | > 40 | - |
| hCNT3 | 27.67 ± 0.43 | 4.69 ± 1.35 |
Values are presented as mean ± SD from 5 separate CP samples. For every sample the quantification or threshold cycle (Cq) value was calculated as an average from 2 replicates. The linear form of the Cq values was corrected for the reaction efficiency (E), and is presented as E-Cq. The Cq value was much lower for hENT3 than for other ENTs and CNTs, indicating that this nucleoside transporter was the most abundant at the transcript level.
Figure 2A typical agarose gel obtained after electrophoresis of the PCR products, stained with ethidium-bromide. Bands of expected sizes were obtained for hENT1, hENT2, hENT3 and hCNT3, while bands corresponding to hCNT1 and hCNT2 were absent.
Figure 3The uptake of [. The data are presented as means ± SEM from 3-4 separate experiments. The uptake values for inosine by CP tissue in aCSF (presence of Na+) after 5 and 10 min of incubation were significantly higher than the corresponding uptake values seen in Na+-free aCSF (p < 0.01). Uptake of inosine after 5 min (n = 3) and 10 min (n = 3) of incubation in the presence of 0.5 μM NBMPR in Na+-free aCSF did not differ significantly from the corresponding uptake after incubation in Na+-free aCSF which did not contain NBMPR (p > 0.05). The presence of 10 μM NBMPR in Na+-free aCSF caused significant inhibition of inosine uptake after 5 min (n = 4, p < 0.01) and after 10 min (n = 3, p < 0.001), when compared to the uptake in Na+-free aCSF which did not contain NBMPR.