Literature DB >> 20150127

Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes.

Elizabeth M Glass1, Jared Wilkening, Andreas Wilke, Dionysios Antonopoulos, Folker Meyer.   

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Year:  2010        PMID： 20150127     DOI： 10.1101/pdb.prot5368

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN： 1559-6095


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  130 in total

1.  In-feed antibiotic effects on the swine intestinal microbiome.

Authors:  Torey Looft; Timothy A Johnson; Heather K Allen; Darrell O Bayles; David P Alt; Robert D Stedtfeld; Woo Jun Sul; Tiffany M Stedtfeld; Benli Chai; James R Cole; Syed A Hashsham; James M Tiedje; Thad B Stanton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Metatranscriptomic evidence for co-occurring top-down and bottom-up controls on toxic cyanobacterial communities.

Authors:  Morgan M Steffen; B Shafer Belisle; Sue B Watson; Gregory L Boyer; Richard A Bourbonniere; Steven W Wilhelm
Journal:  Appl Environ Microbiol       Date:  2015-02-06       Impact factor: 4.792

Review 3.  Analytical tools and databases for metagenomics in the next-generation sequencing era.

Authors:  Mincheol Kim; Ki-Hyun Lee; Seok-Whan Yoon; Bong-Soo Kim; Jongsik Chun; Hana Yi
Journal:  Genomics Inform       Date:  2013-09-30

4.  Influence of Diet Composition on Cattle Rumen Methanogenesis: A Comparative Metagenomic Analysis in Indian and Exotic Cattle.

Authors:  Nidhi R Parmar; Prabhakar D Pandit; Hemant J Purohit; J I Nirmal Kumar; Chaitanya G Joshi
Journal:  Indian J Microbiol       Date:  2017-01-16       Impact factor: 2.461

5.  Metabolic Interactions of a Chain Elongation Microbiome.

Authors:  Wenhao Han; Pinjing He; Liming Shao; Fan Lü
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

6.  Integrative analysis of environmental sequences using MEGAN4.

Authors:  Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster
Journal:  Genome Res       Date:  2011-06-20       Impact factor: 9.043

7.  rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries.

Authors:  Jae-Hak Lee; Hana Yi; Jongsik Chun
Journal:  J Microbiol       Date:  2011-09-02       Impact factor: 3.422

8.  Microbial community analysis of pH 4 thermal springs in Yellowstone National Park.

Authors:  Xiaoben Jiang; Cristina D Takacs-Vesbach
Journal:  Extremophiles       Date:  2016-11-02       Impact factor: 2.395

Review 9.  Intercepting signalling mechanism to control environmental biofouling.

Authors:  Smita Pal; Asifa Qureshi; Hemant J Purohit
Journal:  3 Biotech       Date:  2018-08-09       Impact factor: 2.406

10.  Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.

Authors:  Migun Shakya; Christopher Quince; James H Campbell; Zamin K Yang; Christopher W Schadt; Mircea Podar
Journal:  Environ Microbiol       Date:  2013-02-06       Impact factor: 5.491
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