Literature DB >> 20148428

Redesigning the active site of transaldolase TalB from Escherichia coli: new variants with improved affinity towards nonphosphorylated substrates.

Sarah Schneider1, Mariana Gutiérrez, Tatyana Sandalova, Gunter Schneider, Pere Clapés, Georg A Sprenger, Anne K Samland.   

Abstract

Recently, we reported on a transaldolase B variant (TalB F178Y) that is able to use dihydroxyacetone (DHA) as donor in aldol reactions. In a second round of protein engineering, we aimed at improving the affinity of this variant towards nonphosphorylated acceptor aldehydes, that is, glyceraldehyde (GA). The anion binding site was identified in the X-ray structure of TalB F178Y where a sulfate ion from the buffer was bound in the active site. Therefore, we performed site-directed saturation mutagenesis at three residues forming the putative phosphate binding site, Arg181, Ser226 and Arg228. The focused libraries were screened for the formation of D-fructose from DHA and d,l-GA by using an adjusted colour assay. The best results with respect to the synthesis of D-fructose were achieved with the TalB F178Y/R181E variant, which exhibited an at least fivefold increase in affinity towards d,l-GA (K(M)=24 mM). We demonstrated that this double mutant can use D-GA, glycolaldehyde and the L-isomer, L-GA, as acceptor substrates. This resulted in preparative synthesis of D-fructose, D-xylulose and L-sorbose when DHA was used as donor. Hence, we engineered a DHA-dependent aldolase that can synthesise the formation of polyhydroxylated compounds from simple and cheap substrates at preparative scale.

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Year:  2010        PMID: 20148428     DOI: 10.1002/cbic.200900720

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  8 in total

1.  Improving upon nature: active site remodeling produces highly efficient aldolase activity toward hydrophobic electrophilic substrates.

Authors:  Manoj Cheriyan; Eric J Toone; Carol A Fierke
Journal:  Biochemistry       Date:  2012-02-16       Impact factor: 3.162

2.  Twisted Schiff base intermediates and substrate locale revise transaldolase mechanism.

Authors:  Anja Lehwess-Litzmann; Piotr Neumann; Christoph Parthier; Stefan Lüdtke; Ralph Golbik; Ralf Ficner; Kai Tittmann
Journal:  Nat Chem Biol       Date:  2011-08-21       Impact factor: 15.040

Review 3.  DHAP-dependent aldolases from (hyper)thermophiles: biochemistry and applications.

Authors:  Pierpaolo Falcicchio; Suzanne Wolterink-Van Loo; Maurice C R Franssen; John van der Oost
Journal:  Extremophiles       Date:  2013-10-29       Impact factor: 2.395

Review 4.  Novel carbon-carbon bond formations for biocatalysis.

Authors:  Verena Resch; Joerg H Schrittwieser; Elina Siirola; Wolfgang Kroutil
Journal:  Curr Opin Biotechnol       Date:  2011-02-25       Impact factor: 9.740

Review 5.  Rational approaches for engineering novel functionalities in carbon-carbon bond forming enzymes.

Authors:  Perrin Baker; Stephen Y K Seah
Journal:  Comput Struct Biotechnol J       Date:  2012-10-02       Impact factor: 7.271

Review 6.  Computational tools for rational protein engineering of aldolases.

Authors:  Michael Widmann; Jürgen Pleiss; Anne K Samland
Journal:  Comput Struct Biotechnol J       Date:  2012-11-13       Impact factor: 7.271

Review 7.  Engineering aldolases as biocatalysts.

Authors:  Claire L Windle; Marion Müller; Adam Nelson; Alan Berry
Journal:  Curr Opin Chem Biol       Date:  2014-01-04       Impact factor: 8.822

Review 8.  Unravelling Formaldehyde Metabolism in Bacteria: Road towards Synthetic Methylotrophy.

Authors:  Vivien Jessica Klein; Marta Irla; Marina Gil López; Trygve Brautaset; Luciana Fernandes Brito
Journal:  Microorganisms       Date:  2022-01-20
  8 in total

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