Literature DB >> 20148030

Genome sequencing and analysis of the model grass Brachypodium distachyon.

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Abstract

Three subfamilies of grasses, the Ehrhartoideae, Panicoideae and Pooideae, provide the bulk of human nutrition and are poised to become major sources of renewable energy. Here we describe the genome sequence of the wild grass Brachypodium distachyon (Brachypodium), which is, to our knowledge, the first member of the Pooideae subfamily to be sequenced. Comparison of the Brachypodium, rice and sorghum genomes shows a precise history of genome evolution across a broad diversity of the grasses, and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat. The high-quality genome sequence, coupled with ease of cultivation and transformation, small size and rapid life cycle, will help Brachypodium reach its potential as an important model system for developing new energy and food crops.

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Year:  2010        PMID: 20148030     DOI: 10.1038/nature08747

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  40 in total

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Journal:  Genome       Date:  2010-01       Impact factor: 2.166

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6.  The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.

Authors:  Naxin Huo; Gerard R Lazo; John P Vogel; Frank M You; Yaqin Ma; Daniel M Hayden; Devin Coleman-Derr; Theresa A Hill; Jan Dvorak; Olin D Anderson; Ming-Cheng Luo; Yong Q Gu
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8.  Sixty million years in evolution of soft grain trait in grasses: emergence of the softness locus in the common ancestor of Pooideae and Ehrhartoideae, after their divergence from Panicoideae.

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Journal:  Mol Biol Evol       Date:  2009-04-24       Impact factor: 16.240

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Journal:  Plant Physiol       Date:  2008-11-14       Impact factor: 8.340

10.  A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Authors:  Yong Q Gu; Yaqin Ma; Naxin Huo; John P Vogel; Frank M You; Gerard R Lazo; William M Nelson; Carol Soderlund; Jan Dvorak; Olin D Anderson; Ming-Cheng Luo
Journal:  BMC Genomics       Date:  2009-10-27       Impact factor: 3.969

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5.  Comparative analysis of the cold acclimation and freezing tolerance capacities of seven diploid Brachypodium distachyon accessions.

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7.  Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses.

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9.  Regulation of FLOWERING LOCUS T by a microRNA in Brachypodium distachyon.

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10.  Efficient isolation of ion beam-induced mutants for homoeologous loci in common wheat and comparison of the contributions of Glu-1 loci to gluten functionality.

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Journal:  Theor Appl Genet       Date:  2013-11-09       Impact factor: 5.699

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