Literature DB >> 20147062

High-resolution dual-trap optical tweezers with differential detection: an introduction.

Carlos Bustamante, Yann R Chemla, Jeffrey R Moffitt.   

Abstract

Optical traps or "optical tweezers" have become an indispensable tool in understanding fundamental biological processes. The ability to manipulate and probe individual molecules or molecular complexes has led to a new, more refined understanding of the mechanical properties of the fundamental building blocks of the cell, and of the mechanism by which molecular machines function. The field has seen a steady stream of technological advances that have greatly refined the technique. One major effort has been in developing methods to resolve motions at the angstrom level--the fundamental length scale for many biological processes. This drive has only recently come to fruition with the advent of high-resolution optical trapping techniques that can now detect movements on the scale of a single base pair of DNA, 3.4 A. Here we briefly review the basic concepts and components of optical traps and the single-molecule experiments in which they are used.

Mesh:

Year:  2009        PMID: 20147062     DOI: 10.1101/pdb.top60

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  6 in total

1.  High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier.

Authors:  Zhijie Chen; Ronen Gabizon; Aidan I Brown; Antony Lee; Aixin Song; César Díaz-Celis; Craig D Kaplan; Elena F Koslover; Tingting Yao; Carlos Bustamante
Journal:  Elife       Date:  2019-07-31       Impact factor: 8.140

2.  Gene expression analysis of mouse embryonic stem cells following levitation in an ultrasound standing wave trap.

Authors:  Despina Bazou; Roisin Kearney; Fiona Mansergh; Celine Bourdon; Jane Farrar; Michael Wride
Journal:  Ultrasound Med Biol       Date:  2011-01-05       Impact factor: 2.998

3.  Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates.

Authors:  Ronen Gabizon; Antony Lee; Hanif Vahedian-Movahed; Richard H Ebright; Carlos J Bustamante
Journal:  Nat Commun       Date:  2018-07-26       Impact factor: 14.919

Review 4.  Probing the structural dynamics of proteins and nucleic acids with optical tweezers.

Authors:  Dustin B Ritchie; Michael T Woodside
Journal:  Curr Opin Struct Biol       Date:  2015-07-17       Impact factor: 6.809

5.  Step detection in single-molecule real time trajectories embedded in correlated noise.

Authors:  Srikesh G Arunajadai; Wei Cheng
Journal:  PLoS One       Date:  2013-03-22       Impact factor: 3.240

6.  Optical Methods to Study Protein-DNA Interactions in Vitro and in Living Cells at the Single-Molecule Level.

Authors:  Carina Monico; Marco Capitanio; Gionata Belcastro; Francesco Vanzi; Francesco S Pavone
Journal:  Int J Mol Sci       Date:  2013-02-18       Impact factor: 5.923

  6 in total

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