Literature DB >> 20145801

Viral assembly: a molecular modeling perspective.

Stephen C Harvey1, Anton S Petrov, Batsal Devkota, Mustafa Burak Boz.   

Abstract

Icosahedral viruses are among the smallest and simplest of biological systems. The investigation of their structures represented the first step toward the establishment of molecular biophysics, over half a century ago. Many research groups are now pursuing investigations of viral assembly, a process that could offer new opportunities for the design of antiviral drugs and novel nanoparticles. A variety of experimental, theoretical and computational methods have been brought to bear on the study of virus structure and assembly. In this Perspective we review the contributions of theoretical and computational approaches to our understanding of the structure, energetics, thermodynamics and assembly of DNA bacteriophage and single-stranded icosahedral RNA viruses.

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Year:  2009        PMID: 20145801     DOI: 10.1039/b912884k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  22 in total

1.  Mechanisms of capsid assembly around a polymer.

Authors:  Aleksandr Kivenson; Michael F Hagan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4.

Authors:  Anton S Petrov; Stephen C Harvey
Journal:  J Struct Biol       Date:  2010-11-11       Impact factor: 2.867

3.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

4.  Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA.

Authors:  Zachary T Berndsen; Nicholas Keller; Douglas E Smith
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

5.  Density functional theory for encapsidated polyelectrolytes: a comparison with Monte Carlo simulation.

Authors:  Zhehui Jin; Jianzhong Wu
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

6.  Comment on the letter by A. Ben-Shaul: "entropy, energy, and bending of DNA in viral capsids".

Authors:  Stephen C Harvey
Journal:  Biophys J       Date:  2014-01-21       Impact factor: 4.033

7.  Molecular interactions and residues involved in force generation in the T4 viral DNA packaging motor.

Authors:  Amy D Migliori; Douglas E Smith; Gaurav Arya
Journal:  J Mol Biol       Date:  2014-10-13       Impact factor: 5.469

Review 8.  States of phage T3/T7 capsids: buoyant density centrifugation and cryo-EM.

Authors:  Philip Serwer; Elena T Wright; Borries Demeler; Wen Jiang
Journal:  Biophys Rev       Date:  2017-12-14

9.  The entropic cost of polymer confinement.

Authors:  Mark R Smyda; Stephen C Harvey
Journal:  J Phys Chem B       Date:  2012-08-27       Impact factor: 2.991

10.  Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29.

Authors:  Nicholas Keller; Damian delToro; Shelley Grimes; Paul J Jardine; Douglas E Smith
Journal:  Phys Rev Lett       Date:  2014-06-17       Impact factor: 9.161

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