Literature DB >> 20144757

Methods in mammalian autophagy research.

Noboru Mizushima1, Tamotsu Yoshimori, Beth Levine.   

Abstract

Autophagy has been implicated in many physiological and pathological processes. Accordingly, there is a growing scientific need to accurately identify, quantify, and manipulate the process of autophagy. However, as autophagy involves dynamic and complicated processes, it is often analyzed incorrectly. In this Primer, we discuss methods to monitor autophagy and to modulate autophagic activity, with a primary focus on mammalian macroautophagy. 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20144757      PMCID: PMC2852113          DOI: 10.1016/j.cell.2010.01.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  86 in total

1.  Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.

Authors:  Nao Hosokawa; Taichi Hara; Takeshi Kaizuka; Chieko Kishi; Akito Takamura; Yutaka Miura; Shun-ichiro Iemura; Tohru Natsume; Kenji Takehana; Naoyuki Yamada; Jun-Lin Guan; Noriko Oshiro; Noboru Mizushima
Journal:  Mol Biol Cell       Date:  2009-02-11       Impact factor: 4.138

Review 2.  Vesicular trafficking and autophagosome formation.

Authors:  A Longatti; S A Tooze
Journal:  Cell Death Differ       Date:  2009-04-17       Impact factor: 15.828

3.  Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages.

Authors:  Kohichi Matsunaga; Tatsuya Saitoh; Keisuke Tabata; Hiroko Omori; Takashi Satoh; Naoki Kurotori; Ikuko Maejima; Kanae Shirahama-Noda; Tohru Ichimura; Toshiaki Isobe; Shizuo Akira; Takeshi Noda; Tamotsu Yoshimori
Journal:  Nat Cell Biol       Date:  2009-03-08       Impact factor: 28.824

Review 4.  Autophagy genes in immunity.

Authors:  Herbert W Virgin; Beth Levine
Journal:  Nat Immunol       Date:  2009-05       Impact factor: 25.606

5.  Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos.

Authors:  Congcong He; Clinton R Bartholomew; Weibin Zhou; Daniel J Klionsky
Journal:  Autophagy       Date:  2009-05-06       Impact factor: 16.016

6.  Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism.

Authors:  Edmond Y W Chan; Andrea Longatti; Nicole C McKnight; Sharon A Tooze
Journal:  Mol Cell Biol       Date:  2008-10-20       Impact factor: 4.272

7.  An ATP-competitive mammalian target of rapamycin inhibitor reveals rapamycin-resistant functions of mTORC1.

Authors:  Carson C Thoreen; Seong A Kang; Jae Won Chang; Qingsong Liu; Jianming Zhang; Yi Gao; Laurie J Reichling; Taebo Sim; David M Sabatini; Nathanael S Gray
Journal:  J Biol Chem       Date:  2009-01-15       Impact factor: 5.157

Review 8.  Autophagy, immunity, and microbial adaptations.

Authors:  Vojo Deretic; Beth Levine
Journal:  Cell Host Microbe       Date:  2009-06-18       Impact factor: 21.023

9.  Active-site inhibitors of mTOR target rapamycin-resistant outputs of mTORC1 and mTORC2.

Authors:  Morris E Feldman; Beth Apsel; Aino Uotila; Robbie Loewith; Zachary A Knight; Davide Ruggero; Kevan M Shokat
Journal:  PLoS Biol       Date:  2009-02-10       Impact factor: 8.029

10.  In search of an "autophagomometer".

Authors:  David C Rubinsztein; Ana Maria Cuervo; Brinda Ravikumar; Sovan Sarkar; Viktor Korolchuk; Susmita Kaushik; Daniel J Klionsky
Journal:  Autophagy       Date:  2009-07-23       Impact factor: 16.016

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  1970 in total

1.  A DNA nanomachine chemically resolves lysosomes in live cells.

Authors:  KaHo Leung; Kasturi Chakraborty; Anand Saminathan; Yamuna Krishnan
Journal:  Nat Nanotechnol       Date:  2018-12-03       Impact factor: 39.213

2.  Synthesis and Evaluation of Chloroquine-Containing DMAEMA Copolymers as Efficient Anti-miRNA Delivery Vectors with Improved Endosomal Escape and Antimigratory Activity in Cancer Cells.

Authors:  Ying Xie; Fei Yu; Weimin Tang; Bolutito Oluwole Alade; Zheng-Hong Peng; Yazhe Wang; Jing Li; David Oupický
Journal:  Macromol Biosci       Date:  2017-08-04       Impact factor: 4.979

3.  Identification of an autophagy defect in smokers' alveolar macrophages.

Authors:  Martha M Monick; Linda S Powers; Katherine Walters; Nina Lovan; Michael Zhang; Alicia Gerke; Sif Hansdottir; Gary W Hunninghake
Journal:  J Immunol       Date:  2010-10-04       Impact factor: 5.422

Review 4.  Autophagy in cigarette smoke-induced chronic obstructive pulmonary disease.

Authors:  Stefan W Ryter; Seon-Jin Lee; Augustine Mk Choi
Journal:  Expert Rev Respir Med       Date:  2010-10       Impact factor: 3.772

Review 5.  Recent progress in research on molecular mechanisms of autophagy in the heart.

Authors:  Yasuhiro Maejima; Yun Chen; Mitsuaki Isobe; Åsa B Gustafsson; Richard N Kitsis; Junichi Sadoshima
Journal:  Am J Physiol Heart Circ Physiol       Date:  2014-11-14       Impact factor: 4.733

6.  Targeting HPV-16 antigens to the endoplasmic reticulum induces an endoplasmic reticulum stress response.

Authors:  David H Martínez-Puente; José J Pérez-Trujillo; Yolanda Gutiérrez-Puente; Humberto Rodríguez-Rocha; Aracely García-García; Odila Saucedo-Cárdenas; Roberto Montes-de-Oca-Luna; María J Loera-Arias
Journal:  Cell Stress Chaperones       Date:  2019-01-02       Impact factor: 3.667

7.  w09, a novel autophagy enhancer, induces autophagy-dependent cell apoptosis via activation of the EGFR-mediated RAS-RAF1-MAP2K-MAPK1/3 pathway.

Authors:  Pinghu Zhang; Zuguo Zheng; Li Ling; Xiaohui Yang; Ni Zhang; Xue Wang; Maozhi Hu; Yu Xia; Yiwen Ma; Haoran Yang; Yunyi Wang; Hongqi Liu
Journal:  Autophagy       Date:  2017-05-17       Impact factor: 16.016

8.  Rhes, a striatal-selective protein implicated in Huntington disease, binds beclin-1 and activates autophagy.

Authors:  Robert G Mealer; Alexandra J Murray; Neelam Shahani; Srinivasa Subramaniam; Solomon H Snyder
Journal:  J Biol Chem       Date:  2013-12-09       Impact factor: 5.157

9.  Evidence for the involvement of GD3 ganglioside in autophagosome formation and maturation.

Authors:  Paola Matarrese; Tina Garofalo; Valeria Manganelli; Lucrezia Gambardella; Matteo Marconi; Maria Grasso; Antonella Tinari; Roberta Misasi; Walter Malorni; Maurizio Sorice
Journal:  Autophagy       Date:  2014-02-10       Impact factor: 16.016

10.  Hypertonic stress promotes autophagy and microtubule-dependent autophagosomal clusters.

Authors:  Paula Nunes; Thomas Ernandez; Isabelle Roth; Xiaomu Qiao; Déborah Strebel; Richard Bouley; Anne Charollais; Pierluigi Ramadori; Michelangelo Foti; Paolo Meda; Eric Féraille; Dennis Brown; Udo Hasler
Journal:  Autophagy       Date:  2013-02-04       Impact factor: 16.016

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