Literature DB >> 20131804

Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions.

Takeshi Sunami1, Kazufumi Hosoda, Hiroaki Suzuki, Tomoaki Matsuura, Tetsuya Yomo.   

Abstract

One of the important characteristics of the cellular system is that interactions between the plasma membrane and water-soluble molecules in the cytoplasm are enhanced by the confinement of the molecules to the small volume of the intracellular space. Studying this effect in a model cell system, we measured the time evolution of an enzymatic hydrolysis reaction and a cell-free protein synthesis reaction taking place in giant liposomes having various size and phospholipid compositions by a flow cytometry. This single vesicle-based assay of a large number of liposomes enabled us to examine the volume dependence of enclosed reactions in detail, revealing that the presence of specific lipid affected the specific kinetic parameters of encapsulated reactions.

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Year:  2010        PMID: 20131804     DOI: 10.1021/la904569m

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  9 in total

1.  Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA.

Authors:  Kensuke Kurihara; Mieko Tamura; Koh-Ichiroh Shohda; Taro Toyota; Kentaro Suzuki; Tadashi Sugawara
Journal:  Nat Chem       Date:  2011-09-04       Impact factor: 24.427

2.  In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes.

Authors:  Naoki Ohta; Yasuhiko Kato; Hajime Watanabe; Hirotada Mori; Tomoaki Matsuura
Journal:  Sci Rep       Date:  2016-11-03       Impact factor: 4.379

3.  Out-of-equilibrium microcompartments for the bottom-up integration of metabolic functions.

Authors:  Thomas Beneyton; Dorothee Krafft; Claudia Bednarz; Christin Kleineberg; Christian Woelfer; Ivan Ivanov; Tanja Vidaković-Koch; Kai Sundmacher; Jean-Christophe Baret
Journal:  Nat Commun       Date:  2018-06-19       Impact factor: 14.919

4.  Photoactivation of Cell-Free Expressed Archaerhodopsin-3 in a Model Cell Membrane.

Authors:  Navid Khangholi; Marc Finkler; Ralf Seemann; Albrecht Ott; Jean-Baptiste Fleury
Journal:  Int J Mol Sci       Date:  2021-11-05       Impact factor: 5.923

5.  Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes.

Authors:  Takehiro Nishikawa; Takeshi Sunami; Tomoaki Matsuura; Tetsuya Yomo
Journal:  J Nucleic Acids       Date:  2012-08-16

6.  Quasi-cellular systems: stochastic simulation analysis at nanoscale range.

Authors:  Lorenzo Calviello; Pasquale Stano; Fabio Mavelli; Pier Luigi Luisi; Roberto Marangoni
Journal:  BMC Bioinformatics       Date:  2013-04-22       Impact factor: 3.169

7.  Reverse Transcription Polymerase Chain Reaction in Giant Unilamellar Vesicles.

Authors:  Mamiko Tsugane; Hiroaki Suzuki
Journal:  Sci Rep       Date:  2018-06-15       Impact factor: 4.379

Review 8.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24

Review 9.  Modeling Cell-Free Protein Synthesis Systems-Approaches and Applications.

Authors:  Jan Müller; Martin Siemann-Herzberg; Ralf Takors
Journal:  Front Bioeng Biotechnol       Date:  2020-10-28
  9 in total

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