Literature DB >> 20127880

Relaxed energetic maps of kappa-carrabiose: a DFT study.

N Yousfi1, M Sekkal-Rahal, A Sayede, M Springborg.   

Abstract

The B3LYP density function was used with the 6-31G(d) basis set to perform relaxed energetic contour maps of the charged form of kappa-carrabiose in the gas phase and for the neutral form first in the gas phase and then by simulating the presence of water as solvent using the Onsager model. Only one starting conformation has been considered to perform all the calculations. Rigid energetic maps have been then constructed either by addition of diffuse or polarization functions to the basis set obtaining in that way 6-31+G(d)//6-31G(d), 6-31+G(d,p)//6-31G(d), and 6-311++G(d,p)//6-31G(d) energetic maps that have been carefully examined. The obtained structures corresponding to the lower energy conformers have been then fully optimized using different basis sets with the B3LYP method, a reversion in term of energy has been observed for the two first minima in the case of the charged disaccharide in the gas phase, this was attributed to the large grid of 30 degrees that could lead to the exclusion of an intermediate value corresponding to the real minimum of energy. We thus suggest that after establishing potential energy maps it is essential to proceed to full optimizations of the lower energy conformers. Calculations using the more accurate correlated method MP2 with the 6-31G(d) basis set have also been performed for conformers of the two disaccharides in the gas phase. 2010 Wiley Periodicals, Inc.

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Year:  2010        PMID: 20127880     DOI: 10.1002/jcc.21497

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

1.  Testing the CP-correction procedure with different DFT methods on H-bonding complexes of κ-carrabiose with water molecules.

Authors:  Rachida Fodil; Majda Sekkal-Rahal; Adlane Sayede
Journal:  J Mol Model       Date:  2017-01-14       Impact factor: 1.810

2.  Density functional conformational study of 2-O-sulfated 3,6 anhydro-α-D-galactose and of neo-κ- and ι-carrabiose molecules in gas phase and water.

Authors:  Noreya Bestaoui-Berrekhchi-Berrahma; Philippe Derreumaux; Majda Sekkal-Rahal; Michael Springborg; Adlane Sayede; Noureddine Yousfi; Abd-Ed-Daim Kadoun
Journal:  J Mol Model       Date:  2012-10-20       Impact factor: 1.810

3.  A structural DFT study of MM, GG, MG, and GM alginic acid disaccharides and reactivity of the MG metallic complexes.

Authors:  Lahcène Bekri; Mourad Zouaoui-Rabah; Michael Springborg; Majda Sekkal Rahal
Journal:  J Mol Model       Date:  2018-10-10       Impact factor: 1.810

  3 in total

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