Literature DB >> 20124343

Peroxisome diversity and evolution.

Toni Gabaldón1.   

Abstract

Peroxisomes are organelles bounded by a single membrane that can be found in all major groups of eukaryotes. A single evolutionary origin of this cellular compartment is supported by the presence, in diverse organisms, of a common set of proteins implicated in peroxisome biogenesis and maintenance. Their enzymatic content, however, can vary substantially across species, indicating a high level of evolutionary plasticity. Proteomic analyses have greatly expanded our knowledge on peroxisomes in some model organisms, including plants, mammals and yeasts. However, we still have a limited knowledge about the distribution and functionalities of peroxisomes in the vast majority of groups of microbial eukaryotes. Here, I review recent advances in our understanding of peroxisome diversity and evolution, with a special emphasis on peroxisomes in microbial eukaryotes.

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Year:  2010        PMID: 20124343      PMCID: PMC2817229          DOI: 10.1098/rstb.2009.0240

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  62 in total

Review 1.  Peroxisomes start their life in the endoplasmic reticulum.

Authors:  Henk F Tabak; Jean L Murk; Ineke Braakman; Hans J Geuze
Journal:  Traffic       Date:  2003-08       Impact factor: 6.215

2.  Peroxisomal matrix protein import: the transient pore model.

Authors:  Ralf Erdmann; Wolfgang Schliebs
Journal:  Nat Rev Mol Cell Biol       Date:  2005-09       Impact factor: 94.444

3.  Peroxisomal targeting signals in green algae.

Authors:  Akiko Shinozaki; Nagisa Sato; Yasuko Hayashi
Journal:  Protoplasma       Date:  2009-02-12       Impact factor: 3.356

Review 4.  The peroxisomal protein import machinery--a case report of transient ubiquitination with a new flavor.

Authors:  C P Grou; A F Carvalho; M P Pinto; I S Alencastre; T A Rodrigues; M O Freitas; T Francisco; C Sá-Miranda; J E Azevedo
Journal:  Cell Mol Life Sci       Date:  2009-01       Impact factor: 9.261

Review 5.  Biogenesis of peroxisomes.

Authors:  P B Lazarow; Y Fujiki
Journal:  Annu Rev Cell Biol       Date:  1985

6.  Diaminobenzidine reactivity of mitochondria and peroxisomes in Tetrahymena and in wild-type and cytochrome oxidase-deficient Paramecium.

Authors:  N Stelly; M Balmefrézol; A Adoutte
Journal:  J Histochem Cytochem       Date:  1975-09       Impact factor: 2.479

7.  Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.

Authors:  Sigrun Reumann; Lavanya Babujee; Changle Ma; Stephanie Wienkoop; Tanja Siemsen; Gerardo E Antonicelli; Nicolas Rasche; Franziska Lüder; Wolfram Weckwerth; Olaf Jahn
Journal:  Plant Cell       Date:  2007-10-19       Impact factor: 11.277

8.  Differential enzyme targeting as an evolutionary adaptation to herbivory in carnivora.

Authors:  Graeme M Birdsey; Jackie Lewin; Andrew A Cunningham; Michael W Bruford; Christopher J Danpure
Journal:  Mol Biol Evol       Date:  2004-01-22       Impact factor: 16.240

Review 9.  A genetic approach to the biogenesis of peroxisomes in the yeast Saccharomyces cerevisiae.

Authors:  R Erdmann; W H Kunau
Journal:  Cell Biochem Funct       Date:  1992-09       Impact factor: 3.685

10.  Transcriptome profiling to identify genes involved in peroxisome assembly and function.

Authors:  Jennifer J Smith; Marcello Marelli; Rowan H Christmas; Franco J Vizeacoumar; David J Dilworth; Trey Ideker; Timothy Galitski; Krassen Dimitrov; Richard A Rachubinski; John D Aitchison
Journal:  J Cell Biol       Date:  2002-07-22       Impact factor: 10.539

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  68 in total

Review 1.  Role of peroxisomes in the biosynthesis and secretion of β-lactams and other secondary metabolites.

Authors:  Juan-Francisco Martín; Ricardo V Ullán; Carlos García-Estrada
Journal:  J Ind Microbiol Biotechnol       Date:  2011-12-11       Impact factor: 3.346

Review 2.  Biochemistry and evolution of anaerobic energy metabolism in eukaryotes.

Authors:  Miklós Müller; Marek Mentel; Jaap J van Hellemond; Katrin Henze; Christian Woehle; Sven B Gould; Re-Young Yu; Mark van der Giezen; Aloysius G M Tielens; William F Martin
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

Review 3.  Intermediary metabolism in protists: a sequence-based view of facultative anaerobic metabolism in evolutionarily diverse eukaryotes.

Authors:  Michael L Ginger; Lillian K Fritz-Laylin; Chandler Fulton; W Zacheus Cande; Scott C Dawson
Journal:  Protist       Date:  2010-10-30

Review 4.  Oxidant sensing by reversible disulfide bond formation.

Authors:  Claudia M Cremers; Ursula Jakob
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

5.  The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.

Authors:  Steven J Karpowicz; Simon E Prochnik; Arthur R Grossman; Sabeeha S Merchant
Journal:  J Biol Chem       Date:  2011-04-22       Impact factor: 5.157

6.  The evolution of organellar metabolism in unicellular eukaryotes.

Authors:  Michael L Ginger; Geoffrey I McFadden; Paul A M Michels
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

Review 7.  Rewiring and regulation of cross-compartmentalized metabolism in protists.

Authors:  Michael L Ginger; Geoffrey I McFadden; Paul A M Michels
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

Review 8.  Evolutionary origins of metabolic compartmentalization in eukaryotes.

Authors:  William Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

9.  Intracellular targeting of ascomycetous catalase-peroxidases (KatG1s).

Authors:  Marcel Zámocký; Gerhard Sekot; Mária Bučková; Jana Godočíková; Christina Schäffer; Marián Farkašovský; Christian Obinger; Bystrík Polek
Journal:  Arch Microbiol       Date:  2013-04-16       Impact factor: 2.552

10.  The role of vacuolar processing enzyme (VPE) from Nicotiana benthamiana in the elicitor-triggered hypersensitive response and stomatal closure.

Authors:  Huajian Zhang; Suomeng Dong; Meifang Wang; Wei Wang; Wenwen Song; Xianying Dou; Xiaobo Zheng; Zhengguang Zhang
Journal:  J Exp Bot       Date:  2010-07-05       Impact factor: 6.992

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