Literature DB >> 20123988

Allosteric mechanism of pyruvate kinase from Leishmania mexicana uses a rock and lock model.

Hugh P Morgan1, Iain W McNae, Matthew W Nowicki, Véronique Hannaert, Paul A M Michels, Linda A Fothergill-Gilmore, Malcolm D Walkinshaw.   

Abstract

Allosteric regulation provides a rate management system for enzymes involved in many cellular processes. Ligand-controlled regulation is easily recognizable, but the underlying molecular mechanisms have remained elusive. We have obtained the first complete series of allosteric structures, in all possible ligated states, for the tetrameric enzyme, pyruvate kinase, from Leishmania mexicana. The transition between inactive T-state and active R-state is accompanied by a simple symmetrical 6 degrees rigid body rocking motion of the A- and C-domain cores in each of the four subunits. However, formation of the R-state in this way is only part of the mechanism; eight essential salt bridge locks that form across the C-C interface provide tetramer rigidity with a coupled 7-fold increase in rate. The results presented here illustrate how conformational changes coupled with effector binding correlate with loss of flexibility and increase in thermal stability providing a general mechanism for allosteric control.

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Year:  2010        PMID: 20123988      PMCID: PMC2857090          DOI: 10.1074/jbc.M109.079905

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  34 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

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Journal:  J Biol Chem       Date:  1988-02-25       Impact factor: 5.157

4.  Structural basis for tumor pyruvate kinase M2 allosteric regulation and catalysis.

Authors:  Jill D Dombrauckas; Bernard D Santarsiero; Andrew D Mesecar
Journal:  Biochemistry       Date:  2005-07-12       Impact factor: 3.162

Review 5.  Mechanisms of cooperativity and allosteric regulation in proteins.

Authors:  M F Perutz
Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

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Authors:  E Eigenbrodt; M Reinacher; U Scheefers-Borchel; H Scheefers; R Friis
Journal:  Crit Rev Oncog       Date:  1992

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Authors:  Heather R Christofk; Matthew G Vander Heiden; Marian H Harris; Arvind Ramanathan; Robert E Gerszten; Ru Wei; Mark D Fleming; Stuart L Schreiber; Lewis C Cantley
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

8.  Crystal structure of Escherichia coli pyruvate kinase type I: molecular basis of the allosteric transition.

Authors:  A Mattevi; G Valentini; M Rizzi; M L Speranza; M Bolognesi; A Coda
Journal:  Structure       Date:  1995-07-15       Impact factor: 5.006

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  27 in total

1.  A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase.

Authors:  Ankita Naithani; Paul Taylor; Burak Erman; Malcolm D Walkinshaw
Journal:  Biophys J       Date:  2015-07-22       Impact factor: 4.033

2.  Conformational Dynamics and Allostery in Pyruvate Kinase.

Authors:  Katherine A Donovan; Shaolong Zhu; Peter Liuni; Fen Peng; Sarah A Kessans; Derek J Wilson; Renwick C J Dobson
Journal:  J Biol Chem       Date:  2016-02-15       Impact factor: 5.157

3.  Distinctive regulatory properties of pyruvate kinase 1 from Aedes aegypti mosquitoes.

Authors:  Natthida Petchampai; Claribel Murillo-Solano; Jun Isoe; Juan C Pizarro; Patricia Y Scaraffia
Journal:  Insect Biochem Mol Biol       Date:  2018-12-19       Impact factor: 4.714

Review 4.  An overview of structure, function, and regulation of pyruvate kinases.

Authors:  Norbert Schormann; Katherine L Hayden; Paul Lee; Surajit Banerjee; Debasish Chattopadhyay
Journal:  Protein Sci       Date:  2019-08-12       Impact factor: 6.725

5.  The trypanocidal drug suramin and other trypan blue mimetics are inhibitors of pyruvate kinases and bind to the adenosine site.

Authors:  Hugh P Morgan; Iain W McNae; Matthew W Nowicki; Wenhe Zhong; Paul A M Michels; Douglas S Auld; Linda A Fothergill-Gilmore; Malcolm D Walkinshaw
Journal:  J Biol Chem       Date:  2011-07-05       Impact factor: 5.157

6.  Probing L-pyruvate kinase regulatory phosphorylation site by mutagenesis.

Authors:  Ilona Faustova; Mart Loog; Jaak Järv
Journal:  Protein J       Date:  2012-10       Impact factor: 2.371

7.  M2 pyruvate kinase provides a mechanism for nutrient sensing and regulation of cell proliferation.

Authors:  Hugh P Morgan; Francis J O'Reilly; Martin A Wear; J Robert O'Neill; Linda A Fothergill-Gilmore; Ted Hupp; Malcolm D Walkinshaw
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

8.  Molecular replacement with a large number of molecules in the asymmetric unit.

Authors:  Chacko Jobichen; Kunchithapadam Swaminathan
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-27       Impact factor: 1.056

9.  The lid domain is important, but not essential, for catalysis of Escherichia coli pyruvate kinase.

Authors:  Elena Sugrue; David Coombes; David Wood; Tong Zhu; Katherine A Donovan; Renwick C J Dobson
Journal:  Eur Biophys J       Date:  2020-09-25       Impact factor: 1.733

10.  Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-π bond.

Authors:  Jeffrey S McFarlane; Trey A Ronnebaum; Kathleen M Meneely; Annemarie Chilton; Aron W Fenton; Audrey L Lamb
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-06-10       Impact factor: 1.056

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