Literature DB >> 20118273

Simulating plant metabolic pathways with enzyme-kinetic models.

Kai Schallau1, Björn H Junker.   

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Year:  2010        PMID： 20118273      PMCID： PMC2850014          DOI： 10.1104/pp.109.149237

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  38 in total

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2.  Modelling photosynthesis and its control.

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3.  Computer modelling and experimental evidence for two steady states in the photosynthetic Calvin cycle.

Authors:  M G Poolman; H Olçer; J C Lloyd; C A Raines; D A Fell
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Review 4.  Experimental and mathematical approaches to modeling plant metabolic networks.

Authors:  Rigoberto Rios-Estepa; Bernd Markus Lange
Journal:  Phytochemistry       Date:  2007-06-11       Impact factor: 4.072

5.  A linear steady-state treatment of enzymatic chains. General properties, control and effector strength.

Authors:  R Heinrich; T A Rapoport
Journal:  Eur J Biochem       Date:  1974-02-15

6.  The kinetics of the enzyme-substrate compound of peroxidase. 1943.

Authors:  B Chance
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1999

7.  A systems biology framework for modeling metabolic enzyme inhibition of Mycobacterium tuberculosis.

Authors:  Xin Fang; Anders Wallqvist; Jaques Reifman
Journal:  BMC Syst Biol       Date:  2009-09-15

8.  ScrumPy: metabolic modelling with Python.

Authors:  M G Poolman
Journal:  Syst Biol (Stevenage)       Date:  2006-09

9.  BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Authors:  Nicolas Le Novère; Benjamin Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li; Herbert Sauro; Maria Schilstra; Bruce Shapiro; Jacky L Snoep; Michael Hucka
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

Review 10.  Applications of genome-scale metabolic reconstructions.

Authors:  Matthew A Oberhardt; Bernhard Ø Palsson; Jason A Papin
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429
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  19 in total

Review 1.  Computational tools for metabolic engineering.

Authors:  Wilbert B Copeland; Bryan A Bartley; Deepak Chandran; Michal Galdzicki; Kyung H Kim; Sean C Sleight; Costas D Maranas; Herbert M Sauro
Journal:  Metab Eng       Date:  2012-05       Impact factor: 9.783

Review 2.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

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Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

3.  Modeling sugar metabolism in tomato fruit.

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Journal:  Plant Cell       Date:  2014-08-26       Impact factor: 11.277

4.  Systems biology of lignin biosynthesis in Populus trichocarpa: heteromeric 4-coumaric acid:coenzyme A ligase protein complex formation, regulation, and numerical modeling.

Authors:  Hsi-Chuan Chen; Jina Song; Jack P Wang; Ying-Chung Lin; Joel Ducoste; Christopher M Shuford; Jie Liu; Quanzi Li; Rui Shi; Angelito Nepomuceno; Fikret Isik; David C Muddiman; Cranos Williams; Ronald R Sederoff; Vincent L Chiang
Journal:  Plant Cell       Date:  2014-03-11       Impact factor: 11.277

5.  Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa.

Authors:  Jack P Wang; Punith P Naik; Hsi-Chuan Chen; Rui Shi; Chien-Yuan Lin; Jie Liu; Christopher M Shuford; Quanzi Li; Ying-Hsuan Sun; Sermsawat Tunlaya-Anukit; Cranos M Williams; David C Muddiman; Joel J Ducoste; Ronald R Sederoff; Vincent L Chiang
Journal:  Plant Cell       Date:  2014-03-11       Impact factor: 11.277

Review 6.  Putting primary metabolism into perspective to obtain better fruits.

Authors:  Bertrand Beauvoit; Isma Belouah; Nadia Bertin; Coffi Belmys Cakpo; Sophie Colombié; Zhanwu Dai; Hélène Gautier; Michel Génard; Annick Moing; Léa Roch; Gilles Vercambre; Yves Gibon
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7.  Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion.

Authors:  Bertrand P Beauvoit; Sophie Colombié; Antoine Monier; Marie-Hélène Andrieu; Benoit Biais; Camille Bénard; Catherine Chéniclet; Martine Dieuaide-Noubhani; Christine Nazaret; Jean-Pierre Mazat; Yves Gibon
Journal:  Plant Cell       Date:  2014-08-19       Impact factor: 11.277

8.  Alcohol Selectivity in a Synthetic Thermophilic n-Butanol Pathway Is Driven by Biocatalytic and Thermostability Characteristics of Constituent Enzymes.

Authors:  Andrew J Loder; Benjamin M Zeldes; G Dale Garrison; Gina L Lipscomb; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2015-08-07       Impact factor: 4.792

9.  Monolignol pathway 4-coumaric acid:coenzyme A ligases in Populus trichocarpa: novel specificity, metabolic regulation, and simulation of coenzyme A ligation fluxes.

Authors:  Hsi-Chuan Chen; Jina Song; Cranos M Williams; Christopher M Shuford; Jie Liu; Jack P Wang; Quanzi Li; Rui Shi; Emine Gokce; Joel Ducoste; David C Muddiman; Ronald R Sederoff; Vincent L Chiang
Journal:  Plant Physiol       Date:  2013-01-23       Impact factor: 8.340

10.  Functional genomics tools applied to plant metabolism: a survey on plant respiration, its connections and the annotation of complex gene functions.

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Journal:  Front Plant Sci       Date:  2012-09-06       Impact factor: 5.753
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