Literature DB >> 20116127

An ontology to clarify homology-related concepts.

Julien Roux, Marc Robinson-Rechavi.   

Abstract

Mesh：

Year:  2010        PMID： 20116127     DOI： 10.1016/j.tig.2009.12.012

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


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  12 in total

1.  The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.

Authors:  Frederic B Bastian; Julien Roux; Anne Niknejad; Aurélie Comte; Sara S Fonseca Costa; Tarcisio Mendes de Farias; Sébastien Moretti; Gilles Parmentier; Valentine Rech de Laval; Marta Rosikiewicz; Julien Wollbrett; Amina Echchiki; Angélique Escoriza; Walid H Gharib; Mar Gonzales-Porta; Yohan Jarosz; Balazs Laurenczy; Philippe Moret; Emilie Person; Patrick Roelli; Komal Sanjeev; Mathieu Seppey; Marc Robinson-Rechavi
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 2.  Deep homology in the age of next-generation sequencing.

Authors:  Patrick Tschopp; Clifford J Tabin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

3.  Ontologies as integrative tools for plant science.

Authors:  Ramona L Walls; Balaji Athreya; Laurel Cooper; Justin Elser; Maria A Gandolfo; Pankaj Jaiswal; Christopher J Mungall; Justin Preece; Stefan Rensing; Barry Smith; Dennis W Stevenson
Journal:  Am J Bot       Date:  2012-07-30       Impact factor: 3.844

4.  Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy.

Authors:  Gilles Parmentier; Frederic B Bastian; Marc Robinson-Rechavi
Journal:  Bioinformatics       Date:  2010-06-02       Impact factor: 6.937

Review 5.  Functional and evolutionary implications of gene orthology.

Authors:  Toni Gabaldón; Eugene V Koonin
Journal:  Nat Rev Genet       Date:  2013-04-04       Impact factor: 53.242

6.  A Logical Model of Homology for Comparative Biology.

Authors:  Paula M Mabee; James P Balhoff; Wasila M Dahdul; Hilmar Lapp; Christopher J Mungall; Todd J Vision
Journal:  Syst Biol       Date:  2020-03-01       Impact factor: 15.683

7.  vHOG, a multispecies vertebrate ontology of homologous organs groups.

Authors:  Anne Niknejad; Aurélie Comte; Gilles Parmentier; Julien Roux; Frederic B Bastian; Marc Robinson-Rechavi
Journal:  Bioinformatics       Date:  2012-01-27       Impact factor: 6.937

8.  The Protein Ontology: a structured representation of protein forms and complexes.

Authors:  Darren A Natale; Cecilia N Arighi; Winona C Barker; Judith A Blake; Carol J Bult; Michael Caudy; Harold J Drabkin; Peter D'Eustachio; Alexei V Evsikov; Hongzhan Huang; Jules Nchoutmboube; Natalia V Roberts; Barry Smith; Jian Zhang; Cathy H Wu
Journal:  Nucleic Acids Res       Date:  2010-10-08       Impact factor: 16.971

9.  Big data and other challenges in the quest for orthologs.

Authors:  Erik L L Sonnhammer; Toni Gabaldón; Alan W Sousa da Silva; Maria Martin; Marc Robinson-Rechavi; Brigitte Boeckmann; Paul D Thomas; Christophe Dessimoz
Journal:  Bioinformatics       Date:  2014-07-26       Impact factor: 6.937

10.  The Orthology Ontology: development and applications.

Authors:  Jesualdo Tomás Fernández-Breis; Hirokazu Chiba; María Del Carmen Legaz-García; Ikuo Uchiyama
Journal:  J Biomed Semantics       Date:  2016-06-04
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