Literature DB >> 20106855

Landscape evolutionary genomics.

David B Lowry1.   

Abstract

Tremendous advances in genetic and genomic techniques have resulted in the capacity to identify genes involved in adaptive evolution across numerous biological systems. One of the next major steps in evolutionary biology will be to determine how landscape-level geographical and environmental features are involved in the distribution of this functional adaptive genetic variation. Here, I outline how an emerging synthesis of multiple disciplines has and will continue to facilitate a deeper understanding of the ways in which heterogeneity of the natural landscapes mould the genomes of organisms.

Mesh:

Year:  2010        PMID: 20106855      PMCID: PMC2936193          DOI: 10.1098/rsbl.2009.0969

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  16 in total

Review 1.  Integrating GIS-based environmental data into evolutionary biology.

Authors:  Kenneth H Kozak; Catherine H Graham; John J Wiens
Journal:  Trends Ecol Evol       Date:  2008-03       Impact factor: 17.712

2.  A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation.

Authors:  S Joost; A Bonin; M W Bruford; L Després; C Conord; G Erhardt; P Taberlet
Journal:  Mol Ecol       Date:  2007-09       Impact factor: 6.185

Review 3.  Divergent selection and heterogeneous genomic divergence.

Authors:  Patrik Nosil; Daniel J Funk; Daniel Ortiz-Barrientos
Journal:  Mol Ecol       Date:  2008-12-29       Impact factor: 6.185

4.  The genetic mosaic suggests a new role for hitchhiking in ecological speciation.

Authors:  Sara Via; Joan West
Journal:  Mol Ecol       Date:  2008-10       Impact factor: 6.185

5.  Natural selection on a major armor gene in threespine stickleback.

Authors:  Rowan D H Barrett; Sean M Rogers; Dolph Schluter
Journal:  Science       Date:  2008-08-28       Impact factor: 47.728

6.  Genetic hitch-hiking in a subdivided population.

Authors:  M Slatkin; T Wiehe
Journal:  Genet Res       Date:  1998-04       Impact factor: 1.588

7.  The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations.

Authors:  B Charlesworth; M Nordborg; D Charlesworth
Journal:  Genet Res       Date:  1997-10       Impact factor: 1.588

8.  Effects of spatially varying selection on nucleotide diversity and linkage disequilibrium: insights from deer mouse globin genes.

Authors:  Jay F Storz; John K Kelly
Journal:  Genetics       Date:  2008-08-20       Impact factor: 4.562

9.  Genomic islands of speciation in Anopheles gambiae.

Authors:  Thomas L Turner; Matthew W Hahn; Sergey V Nuzhdin
Journal:  PLoS Biol       Date:  2005-08-09       Impact factor: 8.029

10.  Adaptive variation in beach mice produced by two interacting pigmentation genes.

Authors:  Cynthia C Steiner; Jesse N Weber; Hopi E Hoekstra
Journal:  PLoS Biol       Date:  2007-09       Impact factor: 8.029

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  9 in total

1.  Genotypic variation and plasticity in climate-adaptive traits after range expansion and fragmentation of red spruce (Picea rubens Sarg.).

Authors:  Anoob Prakash; Sonia DeYoung; Susanne Lachmuth; Jacquelyne L Adams; Kurt Johnsen; John R Butnor; David M Nelson; Matthew C Fitzpatrick; Stephen R Keller
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-02-21       Impact factor: 6.237

Review 2.  Ancient population genomics and the study of evolution.

Authors:  M Parks; S Subramanian; C Baroni; M C Salvatore; G Zhang; C D Millar; D M Lambert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

3.  The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments.

Authors:  Luisa Orsini; Klaus Schwenk; Luc De Meester; John K Colbourne; Michael E Pfrender; Lawrence J Weider
Journal:  Trends Ecol Evol       Date:  2013-02-08       Impact factor: 17.712

4.  Sequencing the genome of the Atlantic salmon (Salmo salar).

Authors:  William S Davidson; Ben F Koop; Steven J M Jones; Patricia Iturra; Rodrigo Vidal; Alejandro Maass; Inge Jonassen; Sigbjorn Lien; Stig W Omholt
Journal:  Genome Biol       Date:  2010-09-30       Impact factor: 13.583

5.  Mapping of ionomic traits in Mimulus guttatus reveals Mo and Cd QTLs that colocalize with MOT1 homologues.

Authors:  David B Lowry; Calvin C Sheng; Zhirui Zhu; Thomas E Juenger; Brett Lahner; David E Salt; John H Willis
Journal:  PLoS One       Date:  2012-01-24       Impact factor: 3.240

6.  Inter-chromosomal variation in the pattern of human population genetic structure.

Authors:  Tesfaye M Baye
Journal:  Hum Genomics       Date:  2011-05       Impact factor: 4.639

Review 7.  Ecological speciation in the tropics: insights from comparative genetic studies in Amazonia.

Authors:  Luciano B Beheregaray; Georgina M Cooke; Ning L Chao; Erin L Landguth
Journal:  Front Genet       Date:  2015-01-21       Impact factor: 4.599

Review 8.  Navigating the Interface Between Landscape Genetics and Landscape Genomics.

Authors:  Andrew Storfer; Austin Patton; Alexandra K Fraik
Journal:  Front Genet       Date:  2018-03-13       Impact factor: 4.599

9.  AFLPs and mitochondrial haplotypes reveal local adaptation to extreme thermal environments in a freshwater gastropod.

Authors:  María Quintela; Magnus P Johansson; Bjarni K Kristjánsson; Rodolfo Barreiro; Anssi Laurila
Journal:  PLoS One       Date:  2014-07-09       Impact factor: 3.240

  9 in total

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