Literature DB >> 20103592

N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors.

Xiaolin Sun1, William T Jones, Dawn Harvey, Patrick J B Edwards, Steven M Pascal, Christopher Kirk, Thérèse Considine, David J Sheerin, Jasna Rakonjac, Christopher J Oldfield, Bin Xue, A Keith Dunker, Vladimir N Uversky.   

Abstract

The plant growth-repressing DELLA proteins (DELLAs) are known to represent a convergence point in integration of multiple developmental and environmental signals in planta, one of which is hormone gibberellic acid (GA). Binding of the liganded GA receptor (GID1/GA) to the N-terminal domain of DELLAs is required for GA-induced degradation of DELLAs via the ubiquitin-proteasome pathway, thus derepressing plant growth. However, the conformational changes of DELLAs upon binding to GID1/GA, which are the key to understanding the precise mechanism of GID1/GA-mediated degradation of DELLAs, remain unclear. Using biophysical, biochemical, and bioinformatics approaches, we demonstrated for the first time that the unbound N-terminal domains of DELLAs are intrinsically unstructured proteins under physiological conditions. Within the intrinsically disordered N-terminal domain of DELLAs, we have identified several molecular recognition features, sequences known to undergo disorder-to-order transitions upon binding to interacting proteins in intrinsically unstructured proteins. In accordance with the molecular recognition feature analyses, we have observed the binding-induced folding of N-terminal domains of DELLAs upon interaction with AtGID1/GA. Our results also indicate that DELLA proteins can be divided into two subgroups in terms of their molecular compactness and their interactions with monoclonal antibodies.

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Year:  2010        PMID: 20103592      PMCID: PMC2857034          DOI: 10.1074/jbc.M109.027011

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  62 in total

Review 1.  What does it mean to be natively unfolded?

Authors:  Vladimir N Uversky
Journal:  Eur J Biochem       Date:  2002-01

2.  Preformed structural elements feature in partner recognition by intrinsically unstructured proteins.

Authors:  Monika Fuxreiter; István Simon; Peter Friedrich; Peter Tompa
Journal:  J Mol Biol       Date:  2004-05-14       Impact factor: 5.469

Review 3.  Flexible nets. The roles of intrinsic disorder in protein interaction networks.

Authors:  A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir N Uversky
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

4.  Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.

Authors:  Alamgir Hussain; Dongni Cao; Hui Cheng; Zilong Wen; Jinrong Peng
Journal:  Plant J       Date:  2005-10       Impact factor: 6.417

5.  Identification and characterization of Arabidopsis gibberellin receptors.

Authors:  Masatoshi Nakajima; Asako Shimada; Yoshiyuki Takashi; Young-Cheon Kim; Seung-Hyun Park; Miyako Ueguchi-Tanaka; Hiroyuki Suzuki; Etsuko Katoh; Satoshi Iuchi; Masatomo Kobayashi; Tatsuya Maeda; Makoto Matsuoka; Isomaro Yamaguchi
Journal:  Plant J       Date:  2006-06       Impact factor: 6.417

6.  Functional analysis of SPINDLY in gibberellin signaling in Arabidopsis.

Authors:  Aron L Silverstone; Tong-Seung Tseng; Stephen M Swain; Alyssa Dill; Sun Yong Jeong; Neil E Olszewski; Tai-Ping Sun
Journal:  Plant Physiol       Date:  2006-12-01       Impact factor: 8.340

7.  Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.

Authors:  Dongni Cao; Hui Cheng; Wei Wu; Hui Meng Soo; Jinrong Peng
Journal:  Plant Physiol       Date:  2006-08-18       Impact factor: 8.340

8.  Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.

Authors:  Suhua Feng; Cristina Martinez; Giuliana Gusmaroli; Yu Wang; Junli Zhou; Feng Wang; Liying Chen; Lu Yu; Juan M Iglesias-Pedraz; Stefan Kircher; Eberhard Schäfer; Xiangdong Fu; Liu-Min Fan; Xing Wang Deng
Journal:  Nature       Date:  2008-01-24       Impact factor: 49.962

9.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

10.  Gibberellin-mediated proteasome-dependent degradation of the barley DELLA protein SLN1 repressor.

Authors:  Xiangdong Fu; Donald E Richards; Tahar Ait-Ali; Llewelyn W Hynes; Helen Ougham; Jinrong Peng; Nicholas P Harberd
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

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  27 in total

Review 1.  Structural disorder in plant proteins: where plasticity meets sessility.

Authors:  Alejandra A Covarrubias; Cesar L Cuevas-Velazquez; Paulette S Romero-Pérez; David F Rendón-Luna; Caspar C C Chater
Journal:  Cell Mol Life Sci       Date:  2017-06-22       Impact factor: 9.261

2.  A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development.

Authors:  Xiaolin Sun; Bin Xue; William T Jones; Erik Rikkerink; A Keith Dunker; Vladimir N Uversky
Journal:  Plant Mol Biol       Date:  2011-07-06       Impact factor: 4.076

3.  The intrinsically disordered N-terminal region of AtREM1.3 remorin protein mediates protein-protein interactions.

Authors:  Macarena Marín; Veronika Thallmair; Thomas Ott
Journal:  J Biol Chem       Date:  2012-10-01       Impact factor: 5.157

Review 4.  Gibberellin signaling: a theme and variations on DELLA repression.

Authors:  Amber L Hauvermale; Tohru Ariizumi; Camille M Steber
Journal:  Plant Physiol       Date:  2012-07-27       Impact factor: 8.340

5.  DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in Arabidopsis.

Authors:  Georgina M Rae; Vladimir N Uversky; Karine David; Marion Wood
Journal:  Mol Genet Genomics       Date:  2014-01-18       Impact factor: 3.291

6.  Prosystemin, a prohormone that modulates plant defense barriers, is an intrinsically disordered protein.

Authors:  Martina Buonanno; Mariangela Coppola; Ilaria Di Lelio; Donata Molisso; Marilisa Leone; Francesco Pennacchio; Emma Langella; Rosa Rao; Simona Maria Monti
Journal:  Protein Sci       Date:  2017-12-05       Impact factor: 6.725

7.  Diacylglycerol Acyltransferase 1 Is Regulated by Its N-Terminal Domain in Response to Allosteric Effectors.

Authors:  Kristian Mark P Caldo; Jeella Z Acedo; Rashmi Panigrahi; John C Vederas; Randall J Weselake; M Joanne Lemieux
Journal:  Plant Physiol       Date:  2017-08-21       Impact factor: 8.340

8.  PELPK1 (At5g09530) contains a unique pentapeptide repeat and is a positive regulator of germination in Arabidopsis thaliana.

Authors:  Abdur Rashid; Michael K Deyholos
Journal:  Plant Cell Rep       Date:  2011-05-11       Impact factor: 4.570

9.  Plant hormones in arbuscular mycorrhizal symbioses: an emerging role for gibberellins.

Authors:  Eloise Foo; John J Ross; William T Jones; James B Reid
Journal:  Ann Bot       Date:  2013-03-18       Impact factor: 4.357

Review 10.  Multifarious roles of intrinsic disorder in proteins illustrate its broad impact on plant biology.

Authors:  Xiaolin Sun; Erik H A Rikkerink; William T Jones; Vladimir N Uversky
Journal:  Plant Cell       Date:  2013-01-29       Impact factor: 11.277

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