Literature DB >> 20095664

Efficient hybrid evolutionary optimization of interatomic potential models.

W Michael Brown1, Aidan P Thompson, Peter A Schultz.   

Abstract

The lack of adequately predictive atomistic empirical models precludes meaningful simulations for many materials systems. We describe advances in the development of a hybrid, population based optimization strategy intended for the automated development of material specific interatomic potentials. We compare two strategies for parallel genetic programming and show that the Hierarchical Fair Competition algorithm produces better results in terms of transferability, despite a lower training set accuracy. We evaluate the use of hybrid local search and several fitness models using system energies and/or particle forces. We demonstrate a drastic reduction in the computation time with the use of a correlation-based fitness statistic. We show that the problem difficulty increases with the number of atoms present in the systems used for model development and demonstrate that vectorization can help to address this issue. Finally, we show that with the use of this method, we are able to "rediscover" the exact model for simple known two- and three-body interatomic potentials using only the system energies and particle forces from the supplied atomic configurations.

Year:  2010        PMID: 20095664     DOI: 10.1063/1.3294562

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  Protein folding prediction in the HP model using ions motion optimization with a greedy algorithm.

Authors:  Cheng-Hong Yang; Kuo-Chuan Wu; Yu-Shiun Lin; Li-Yeh Chuang; Hsueh-Wei Chang
Journal:  BioData Min       Date:  2018-08-08       Impact factor: 2.522

2.  Identifying models of dielectric breakdown strength from high-throughput data via genetic programming.

Authors:  Fenglin Yuan; Tim Mueller
Journal:  Sci Rep       Date:  2017-12-14       Impact factor: 4.379

  2 in total

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