Literature DB >> 20095049

Structural basis for unfolding pathway-dependent stability of proteins: vectorial unfolding versus global unfolding.

Keisuke Yagawa1, Koji Yamano, Takaomi Oguro, Masahiro Maeda, Takehiro Sato, Takaki Momose, Shin Kawano, Toshiya Endo.   

Abstract

Point mutations in proteins can have different effects on protein stability depending on the mechanism of unfolding. In the most interesting case of I27, the Ig-like module of the muscle protein titin, one point mutation (Y9P) yields opposite effects on protein stability during denaturant-induced "global unfolding" versus "vectorial unfolding" by mechanical pulling force or cellular unfolding systems. Here, we assessed the reason for the different effects of the Y9P mutation of I27 on the overall molecular stability and N-terminal unraveling by NMR. We found that the Y9P mutation causes a conformational change that is transmitted through beta-sheet structures to reach the central hydrophobic core in the interior and alters its accessibility to bulk solvent, which leads to destabilization of the hydrophobic core. On the other hand, the Y9P mutation causes a bend in the backbone structure, which leads to the formation of a more stable N-terminal structure probably through enhanced hydrophobic interactions.

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Year:  2010        PMID: 20095049      PMCID: PMC2867010          DOI: 10.1002/pro.346

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  23 in total

1.  Point mutations alter the mechanical stability of immunoglobulin modules.

Authors:  H Li; M Carrion-Vazquez; A F Oberhauser; P E Marszalek; J M Fernandez
Journal:  Nat Struct Biol       Date:  2000-12

Review 2.  Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.

Authors:  M Carrion-Vazquez; A F Oberhauser; T E Fisher; P E Marszalek; H Li; J M Fernandez
Journal:  Prog Biophys Mol Biol       Date:  2000       Impact factor: 3.667

3.  Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state.

Authors:  S B Fowler; J Clarke
Journal:  Structure       Date:  2001-05-09       Impact factor: 5.006

4.  Comparison of the transition states for folding of two Ig-like proteins from different superfamilies.

Authors:  Christian D Geierhaas; Emanuele Paci; Michele Vendruscolo; Jane Clarke
Journal:  J Mol Biol       Date:  2004-10-29       Impact factor: 5.469

Review 5.  Protein unfolding in the cell.

Authors:  Sumit Prakash; Andreas Matouschek
Journal:  Trends Biochem Sci       Date:  2004-11       Impact factor: 13.807

6.  Comparison of the protein-unfolding pathways between mitochondrial protein import and atomic-force microscopy measurements.

Authors:  Takehiro Sato; Masatoshi Esaki; Julio M Fernandez; Toshiya Endo
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-02       Impact factor: 11.205

7.  Structural stabilities of different regions of the titin I27 domain contribute differently to unfolding upon mitochondrial protein import.

Authors:  Takaomi Oguro; Keisuke Yagawa; Takaki Momose; Takehiro Sato; Koji Yamano; Toshiya Endo
Journal:  J Mol Biol       Date:  2008-11-05       Impact factor: 5.469

8.  Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.

Authors:  J Liang; H Edelsbrunner; C Woodward
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

9.  Immunoglobulin-like modules from titin I-band: extensible components of muscle elasticity.

Authors:  S Improta; A S Politou; A Pastore
Journal:  Structure       Date:  1996-03-15       Impact factor: 5.006

10.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

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  10 in total

1.  Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.

Authors:  Mateusz Banach; Katarzyna Prymula; Wiktor Jurkowski; Leszek Konieczny; Irena Roterman
Journal:  J Mol Model       Date:  2011-04-27       Impact factor: 1.810

2.  Computational modelling approaches as a potential platform to understand the molecular genetics association between Parkinson's and Gaucher diseases.

Authors:  D Thirumal Kumar; Hend Ghasan Eldous; Zainab Alaa Mahgoub; C George Priya Doss; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2018-07-06       Impact factor: 3.584

3.  Detection of Internal Matrix Targeting Signal-like Sequences (iMTS-Ls) in Mitochondrial Precursor Proteins Using the TargetP Prediction Tool.

Authors:  Felix Boos; Timo Mühlhaus; Johannes M Herrmann
Journal:  Bio Protoc       Date:  2018-09-05

4.  Mimicking Ribosomal Unfolding of RNA Pseudoknot in a Protein Channel.

Authors:  Xinyue Zhang; Xiaojun Xu; Zhiyu Yang; Andrew J Burcke; Kent S Gates; Shi-Jie Chen; Li-Qun Gu
Journal:  J Am Chem Soc       Date:  2015-12-10       Impact factor: 15.419

5.  Conformational stability of CopC and roles of residues Tyr79 and Trp83.

Authors:  Zhen Song; Xiaoyan Zheng; Binsheng Yang
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

6.  Computational approach to unravel the impact of missense mutations of proteins (D2HGDH and IDH2) causing D-2-hydroxyglutaric aciduria 2.

Authors:  D Thirumal Kumar; L Jerushah Emerald; C George Priya Doss; P Sneha; R Siva; W Charles Emmanuel Jebaraj; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2018-07-09       Impact factor: 3.655

7.  Folding pathway of an Ig domain is conserved on and off the ribosome.

Authors:  Pengfei Tian; Annette Steward; Renuka Kudva; Ting Su; Patrick J Shilling; Adrian A Nickson; Jeffrey J Hollins; Roland Beckmann; Gunnar von Heijne; Jane Clarke; Robert B Best
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-09       Impact factor: 11.205

Review 8.  Structure of giant muscle proteins.

Authors:  Logan C Meyer; Nathan T Wright
Journal:  Front Physiol       Date:  2013-12-12       Impact factor: 4.566

9.  Tom70 enhances mitochondrial preprotein import efficiency by binding to internal targeting sequences.

Authors:  Sandra Backes; Steffen Hess; Felix Boos; Michael W Woellhaf; Sabrina Gödel; Martin Jung; Timo Mühlhaus; Johannes M Herrmann
Journal:  J Cell Biol       Date:  2018-01-30       Impact factor: 10.539

10.  Bioinformatics classification of mutations in patients with Mucopolysaccharidosis IIIA.

Authors:  Himani Tanwar; D Thirumal Kumar; C George Priya Doss; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2019-08-05       Impact factor: 3.584

  10 in total

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