Literature DB >> 20087319

Novel RNA-based strategies for therapeutic gene silencing.

Christopher R Sibley1, Yiqi Seow, Matthew J A Wood.   

Abstract

The past decade has seen intense scientific interest in non-coding RNAs. In particular, the discovery and subsequent exploitation of gene silencing via RNA interference (RNAi) has revolutionized the way in which gene expression is now studied and understood. It is now well established that post-transcriptional gene silencing (PTGS) by the microRNA (miRNA) and other RNAi-associated pathways represents an essential layer of complexity to gene regulation. Gene silencing using RNAi additionally demonstrates huge potential as a therapeutic strategy for eliminating pathogenic gene expression. Yet despite the early promise and excitement of gene-specific silencing, several critical hurdles remain to be overcome before widespread clinical adoption. These include off-target effects, toxicity due to saturation of the endogenous RNAi functions, limited duration of silencing, and effective targeted delivery. In recent years, a range of novel strategies for producing RNA-mediated silencing have been developed that can circumvent many of these hurdles, including small internally segmented interfering RNAs, tandem hairpin RNAs, and pri-miRNA cluster mimics. This review discusses RNA-mediated silencing in light of this recent research, and highlights the benefits and limitations conferred by these novel gene-silencing strategies.

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Year:  2010        PMID: 20087319      PMCID: PMC2839433          DOI: 10.1038/mt.2009.306

Source DB:  PubMed          Journal:  Mol Ther        ISSN: 1525-0016            Impact factor:   11.454


  127 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

2.  U6 promoter-driven siRNAs with four uridine 3' overhangs efficiently suppress targeted gene expression in mammalian cells.

Authors:  Makoto Miyagishi; Kazunari Taira
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

3.  MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms.

Authors:  Yan Zeng; Rui Yi; Bryan R Cullen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

4.  The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells.

Authors:  Marc S Weinberg; Louisa M Villeneuve; Ali Ehsani; Mohammed Amarzguioui; Lars Aagaard; Zhao-Xia Chen; Arthur D Riggs; John J Rossi; Kevin V Morris
Journal:  RNA       Date:  2005-12-22       Impact factor: 4.942

Review 5.  On the art of identifying effective and specific siRNAs.

Authors:  Yi Pei; Thomas Tuschl
Journal:  Nat Methods       Date:  2006-09       Impact factor: 28.547

6.  Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells.

Authors:  Nan Sook Lee; Taikoh Dohjima; Gerhard Bauer; Haitang Li; Ming-Jie Li; Ali Ehsani; Paul Salvaterra; John Rossi
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

7.  Effective suppression of human immunodeficiency virus type 1 through a combination of short- or long-hairpin RNAs targeting essential sequences for retroviral integration.

Authors:  Hironori Nishitsuji; Michinori Kohara; Mari Kannagi; Takao Masuda
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

8.  2'-O-methyl-modified RNAs act as TLR7 antagonists.

Authors:  Marjorie Robbins; Adam Judge; Lisa Liang; Kevin McClintock; Ed Yaworski; Ian MacLachlan
Journal:  Mol Ther       Date:  2007-06-19       Impact factor: 11.454

9.  Combinatorial RNAi against HIV-1 using extended short hairpin RNAs.

Authors:  Ying Poi Liu; Karin Jasmijn von Eije; Nick C T Schopman; Jan-Tinus Westerink; Olivier ter Brake; Joost Haasnoot; Ben Berkhout
Journal:  Mol Ther       Date:  2009-08-11       Impact factor: 11.454

10.  Effect of asymmetric terminal structures of short RNA duplexes on the RNA interference activity and strand selection.

Authors:  Masayuki Sano; Malgorzata Sierant; Makoto Miyagishi; Mahito Nakanishi; Yasuomi Takagi; Shizuyo Sutou
Journal:  Nucleic Acids Res       Date:  2008-09-09       Impact factor: 16.971

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  41 in total

1.  Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific.

Authors:  Kazuo Suzuki; Takaomi Ishida; Makoto Yamagishi; Chantelle Ahlenstiel; Sanjay Swaminathan; Katharine Marks; Daniel Murray; Erin M McCartney; Michael R Beard; Marina Alexander; Damian F J Purcell; David A Cooper; Toshiki Watanabe; Anthony D Kelleher
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

2.  Artificial mirtron-mediated gene knockdown: functional DMPK silencing in mammalian cells.

Authors:  Yiqi Seow; Christopher R Sibley; Matthew J A Wood
Journal:  RNA       Date:  2012-05-30       Impact factor: 4.942

3.  Baculovirus-mediated miRNA regulation to suppress hepatocellular carcinoma tumorigenicity and metastasis.

Authors:  Chiu-Ling Chen; Jaw-Ching Wu; Guan-Yu Chen; Pei-Hsiang Yuan; Yen-Wen Tseng; Kuei-Chang Li; Shiaw-Min Hwang; Yu-Chen Hu
Journal:  Mol Ther       Date:  2014-07-15       Impact factor: 11.454

Review 4.  The miRNA pathway in neurological and skeletal muscle disease: implications for pathogenesis and therapy.

Authors:  Christopher R Sibley; Matthew J A Wood
Journal:  J Mol Med (Berl)       Date:  2011-07-13       Impact factor: 4.599

5.  The effects of Livin shRNA on the response to cisplatin in HepG2 cells.

Authors:  Fangfeng Liu; Hong Chang; Wei Xu; Yunpeng Zhai
Journal:  Oncol Lett       Date:  2015-08-25       Impact factor: 2.967

6.  Gadolinium embedded iron oxide nanoclusters as T1-T2 dual-modal MRI-visible vectors for safe and efficient siRNA delivery.

Authors:  Xiaoyong Wang; Zijian Zhou; Zhiyong Wang; Yunxin Xue; Yun Zeng; Jinhao Gao; Lei Zhu; Xianzhong Zhang; Gang Liu; Xiaoyuan Chen
Journal:  Nanoscale       Date:  2013-09-07       Impact factor: 7.790

7.  Characterization of apoptosis and proliferation in esophageal carcinoma EC109 cells following siRNA-induced down-regulation of TRAF6.

Authors:  Tianzhong Ma; Ning Wang; Zhongjing Su; Ling Chen; Ningxia Zhu; Changhui Ma; Xiancai Chen; Haibin Chen
Journal:  Mol Cell Biochem       Date:  2011-02-11       Impact factor: 3.396

8.  Hexadecylated linear PEI self-assembled nanostructures as efficient vectors for neuronal gene delivery.

Authors:  Ruby Bansal; Brashket Seth; Shashikant Tiwari; Sadaf Jahan; Manisha Kumari; Aditya Bhushan Pant; Rajnish Kumar Chaturvedi; Pradeep Kumar; Kailash Chand Gupta
Journal:  Drug Deliv Transl Res       Date:  2018-10       Impact factor: 4.617

9.  Dendronized gold nanoparticles for siRNA delivery.

Authors:  Sung Tae Kim; Apiwat Chompoosor; Yi-Cheun Yeh; Sarit S Agasti; David J Solfiell; Vincent M Rotello
Journal:  Small       Date:  2012-08-08       Impact factor: 13.281

10.  The co-delivery of oxaliplatin abrogates the immunogenic response to PEGylated siRNA-lipoplex.

Authors:  Eman Alaaeldin; Amr S Abu Lila; Naoto Moriyoshi; Hatem A Sarhan; Tatsuhiro Ishida; Khaled A Khaled; Hiroshi Kiwada
Journal:  Pharm Res       Date:  2013-05-15       Impact factor: 4.200

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