Literature DB >> 20085705

A region of the human HOXD cluster that confers polycomb-group responsiveness.

Caroline J Woo1, Peter V Kharchenko, Laurence Daheron, Peter J Park, Robert E Kingston.   

Abstract

Polycomb group (PcG) proteins are essential for accurate axial body patterning during embryonic development. PcG-mediated repression is conserved in metazoans and is targeted in Drosophila by Polycomb response elements (PREs). However, targeting sequences in humans have not been described. While analyzing chromatin architecture in the context of human embryonic stem cell (hESC) differentiation, we discovered a 1.8kb region between HOXD11 and HOXD12 (D11.12) that is associated with PcG proteins, becomes nuclease hypersensitive, and then shows alteration in nuclease sensitivity as hESCs differentiate. The D11.12 element repressed luciferase expression from a reporter construct and full repression required a highly conserved region and YY1 binding sites. Furthermore, repression was dependent on the PcG proteins BMI1 and EED and a YY1-interacting partner, RYBP. We conclude that D11.12 is a Polycomb-dependent regulatory region with similarities to Drosophila PREs, indicating conservation in the mechanisms that target PcG function in mammals and flies.

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Year:  2010        PMID: 20085705      PMCID: PMC3324942          DOI: 10.1016/j.cell.2009.12.022

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  52 in total

1.  The Drosophila pho-like gene encodes a YY1-related DNA binding protein that is redundant with pleiohomeotic in homeotic gene silencing.

Authors:  J Lesley Brown; Cornelia Fritsch; Jürg Mueller; Judith A Kassis
Journal:  Development       Date:  2003-01       Impact factor: 6.868

2.  Hierarchical recruitment of polycomb group silencing complexes.

Authors:  Liangjun Wang; J Lesley Brown; Ru Cao; Yi Zhang; Judith A Kassis; Richard S Jones
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

3.  General transcriptional silencing by a Polycomb response element in Drosophila.

Authors:  Aditya K Sengupta; Antje Kuhrs; Jürg Müller
Journal:  Development       Date:  2004-03-31       Impact factor: 6.868

Review 4.  Mechanisms of polycomb gene silencing: knowns and unknowns.

Authors:  Jeffrey A Simon; Robert E Kingston
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09-09       Impact factor: 94.444

5.  The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity.

Authors:  R K Mishra; J Mihaly; S Barges; A Spierer; F Karch; K Hagstrom; S E Schweinsberg; P Schedl
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

6.  Functional antagonism of the Polycomb-Group genes eed and Bmi1 in hemopoietic cell proliferation.

Authors:  J Lessard; A Schumacher; U Thorsteinsdottir; M van Lohuizen; T Magnuson; G Sauvageau
Journal:  Genes Dev       Date:  1999-10-15       Impact factor: 11.361

7.  Transcription factor YY1 functions as a PcG protein in vivo.

Authors:  Lakshmi Atchison; Ayesha Ghias; Frank Wilkinson; Nancy Bonini; Michael L Atchison
Journal:  EMBO J       Date:  2003-03-17       Impact factor: 11.598

8.  The Polycomb-group homolog Bmi-1 is a regulator of murine Hox gene expression.

Authors:  N M van der Lugt; M Alkema; A Berns; J Deschamps
Journal:  Mech Dev       Date:  1996-08       Impact factor: 1.882

9.  Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster.

Authors:  Leonie Ringrose; Marc Rehmsmeier; Jean-Maurice Dura; Renato Paro
Journal:  Dev Cell       Date:  2003-11       Impact factor: 12.270

10.  Polycomb group proteins and heritable silencing of Drosophila Hox genes.

Authors:  D Beuchle; G Struhl; J Müller
Journal:  Development       Date:  2001-03       Impact factor: 6.868

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  166 in total

1.  A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis.

Authors:  Liang Zhou; Lijun Wang; Leina Lu; Peiyong Jiang; Hao Sun; Huating Wang
Journal:  J Biol Chem       Date:  2012-05-31       Impact factor: 5.157

Review 2.  Functional Crosstalk Between Lysine Methyltransferases on Histone Substrates: The Case of G9A/GLP and Polycomb Repressive Complex 2.

Authors:  Chiara Mozzetta; Julien Pontis; Slimane Ait-Si-Ali
Journal:  Antioxid Redox Signal       Date:  2014-12-19       Impact factor: 8.401

3.  PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes.

Authors:  Zhonghua Gao; Jin Zhang; Roberto Bonasio; Francesco Strino; Ayana Sawai; Fabio Parisi; Yuval Kluger; Danny Reinberg
Journal:  Mol Cell       Date:  2012-02-10       Impact factor: 17.970

Review 4.  The dynamic interplay in chromatin remodeling factors polycomb and trithorax proteins in response to DNA damage.

Authors:  Shuang Liu; Yongguang Tao; Xiang Chen; Ya Cao
Journal:  Mol Biol Rep       Date:  2011-12-28       Impact factor: 2.316

5.  Epigenetic marks identify functional elements.

Authors:  Randall H Morse
Journal:  Nat Genet       Date:  2010-04       Impact factor: 38.330

Review 6.  Redefining regulation of DNA methylation by RNA interference.

Authors:  Viswanathan Muthusamy; Marcus Bosenberg; Narendra Wajapeyee
Journal:  Genomics       Date:  2010-07-08       Impact factor: 5.736

Review 7.  Charting histone modifications and the functional organization of mammalian genomes.

Authors:  Vicky W Zhou; Alon Goren; Bradley E Bernstein
Journal:  Nat Rev Genet       Date:  2010-11-30       Impact factor: 53.242

Review 8.  PCL2 modulates gene regulatory networks controlling self-renewal and commitment in embryonic stem cells.

Authors:  Emily Walker; Janet L Manias; Wing Y Chang; William L Stanford
Journal:  Cell Cycle       Date:  2011-01-01       Impact factor: 4.534

Review 9.  Throwing the cancer switch: reciprocal roles of polycomb and trithorax proteins.

Authors:  Alea A Mills
Journal:  Nat Rev Cancer       Date:  2010-10       Impact factor: 60.716

Review 10.  Epigenetic modifications in pluripotent and differentiated cells.

Authors:  Alexander Meissner
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

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