Literature DB >> 20080596

Rate, molecular spectrum, and consequences of human mutation.

Michael Lynch1.   

Abstract

Although mutation provides the fuel for phenotypic evolution, it also imposes a substantial burden on fitness through the production of predominantly deleterious alleles, a matter of concern from a human-health perspective. Here, recently established databases on de novo mutations for monogenic disorders are used to estimate the rate and molecular spectrum of spontaneously arising mutations and to derive a number of inferences with respect to eukaryotic genome evolution. Although the human per-generation mutation rate is exceptionally high, on a per-cell division basis, the human germline mutation rate is lower than that recorded for any other species. Comparison with data from other species demonstrates a universal mutational bias toward A/T composition, and leads to the hypothesis that genome-wide nucleotide composition generally evolves to the point at which the power of selection in favor of G/C is approximately balanced by the power of random genetic drift, such that variation in equilibrium genome-wide nucleotide composition is largely defined by variation in mutation biases. Quantification of the hazards associated with introns reveals that mutations at key splice-site residues are a major source of human mortality. Finally, a consideration of the long-term consequences of current human behavior for deleterious-mutation accumulation leads to the conclusion that a substantial reduction in human fitness can be expected over the next few centuries in industrialized societies unless novel means of genetic intervention are developed.

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Year:  2010        PMID: 20080596      PMCID: PMC2824313          DOI: 10.1073/pnas.0912629107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

Review 1.  The origins, patterns and implications of human spontaneous mutation.

Authors:  J F Crow
Journal:  Nat Rev Genet       Date:  2000-10       Impact factor: 53.242

2.  Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis.

Authors:  Peter D Hoffman; Jeffrey M Leonard; Gerrick E Lindberg; Stephanie R Bollmann; John B Hays
Journal:  Genes Dev       Date:  2004-11-01       Impact factor: 11.361

3.  Our load of mutations.

Authors:  H J MULLER
Journal:  Am J Hum Genet       Date:  1950-06       Impact factor: 11.025

4.  Multistage carcinogenesis and the incidence of colorectal cancer.

Authors:  E Georg Luebeck; Suresh H Moolgavkar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-01       Impact factor: 11.205

5.  Somatic mutation rate of the APC gene.

Authors:  T Iwama
Journal:  Jpn J Clin Oncol       Date:  2001-05       Impact factor: 3.019

6.  Strong male-driven evolution of DNA sequences in humans and apes.

Authors:  Kateryna D Makova; Wen-Hsiung Li
Journal:  Nature       Date:  2002-04-11       Impact factor: 49.962

7.  Human diallelic insertion/deletion polymorphisms.

Authors:  James L Weber; Donna David; Jeremy Heil; Ying Fan; Chengfeng Zhao; Gabor Marth
Journal:  Am J Hum Genet       Date:  2002-09-04       Impact factor: 11.025

8.  Cytosine methylation and CpG, TpG (CpA) and TpA frequencies.

Authors:  Kamel Jabbari; Giorgio Bernardi
Journal:  Gene       Date:  2004-05-26       Impact factor: 3.688

9.  Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases.

Authors:  Alexey S Kondrashov
Journal:  Hum Mutat       Date:  2003-01       Impact factor: 4.878

10.  High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

Authors:  Dee R Denver; Krystalynne Morris; Michael Lynch; W Kelley Thomas
Journal:  Nature       Date:  2004-08-05       Impact factor: 49.962

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  302 in total

1.  Pervasive multinucleotide mutational events in eukaryotes.

Authors:  Daniel R Schrider; Jonathan N Hourmozdi; Matthew W Hahn
Journal:  Curr Biol       Date:  2011-06-21       Impact factor: 10.834

2.  Exome sequencing reveals mutations in TRPV3 as a cause of Olmsted syndrome.

Authors:  Zhimiao Lin; Quan Chen; Mingyang Lee; Xu Cao; Jie Zhang; Donglai Ma; Long Chen; Xiaoping Hu; Huijun Wang; Xiaowen Wang; Peng Zhang; Xuanzhu Liu; Liping Guan; Yiquan Tang; Haizhen Yang; Ping Tu; Dingfang Bu; Xuejun Zhu; KeWei Wang; Ruoyu Li; Yong Yang
Journal:  Am J Hum Genet       Date:  2012-03-09       Impact factor: 11.025

3.  The evolution of multimeric protein assemblages.

Authors:  Michael Lynch
Journal:  Mol Biol Evol       Date:  2011-12-05       Impact factor: 16.240

4.  Evidence for elevated mutation rates in low-quality genotypes.

Authors:  Nathaniel P Sharp; Aneil F Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

5.  De novo mutation in schizophrenia.

Authors:  Elliott Rees; George Kirov; Michael C O'Donovan; Michael J Owen
Journal:  Schizophr Bull       Date:  2012-03-26       Impact factor: 9.306

6.  Profile of Michael Lynch.

Authors:  Beth Azar
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

7.  Phylogenomic analysis of the uracil-DNA glycosylase superfamily.

Authors:  J Ignacio Lucas-Lledó; Rohan Maddamsetti; Michael Lynch
Journal:  Mol Biol Evol       Date:  2010-12-06       Impact factor: 16.240

8.  A de novo paradigm for mental retardation.

Authors:  Lisenka E L M Vissers; Joep de Ligt; Christian Gilissen; Irene Janssen; Marloes Steehouwer; Petra de Vries; Bart van Lier; Peer Arts; Nienke Wieskamp; Marisol del Rosario; Bregje W M van Bon; Alexander Hoischen; Bert B A de Vries; Han G Brunner; Joris A Veltman
Journal:  Nat Genet       Date:  2010-11-14       Impact factor: 38.330

Review 9.  Genetics of sudden cardiac death caused by ventricular arrhythmias.

Authors:  Roos F Marsman; Hanno L Tan; Connie R Bezzina
Journal:  Nat Rev Cardiol       Date:  2013-12-10       Impact factor: 32.419

Review 10.  The role of replicates for error mitigation in next-generation sequencing.

Authors:  Kimberly Robasky; Nathan E Lewis; George M Church
Journal:  Nat Rev Genet       Date:  2013-12-10       Impact factor: 53.242

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