Literature DB >> 20080547

Model of human low-density lipoprotein and bound receptor based on cryoEM.

Gang Ren1, Gabby Rudenko, Steven J Ludtke, Johann Deisenhofer, Wah Chiu, Henry J Pownall.   

Abstract

Human plasma low-density lipoproteins (LDL), a risk factor for cardiovascular disease, transfer cholesterol from plasma to liver cells via the LDL receptor (LDLr). Here, we report the structures of LDL and its complex with the LDL receptor extracellular domain (LDL.LDLr) at extracellular pH determined by cryoEM. Difference imaging between LDL.LDLr and LDL localizes the site of LDLr bound to its ligand. The structural features revealed from the cryoEM map lead to a juxtaposed stacking model of cholesteryl esters (CEs). High density in the outer shell identifies protein-rich regions that can be accounted for by a single apolipoprotein (apo B-100, 500 kDa) leading to a model for the distribution of its alpha-helix and beta-sheet rich domains across the surface. The structural relationship between the apo B-100 and CEs appears to dictate the structural stability and function of normal LDL.

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Year:  2009        PMID: 20080547      PMCID: PMC2798884          DOI: 10.1073/pnas.0908004107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Well-defined regions of apolipoprotein B-100 undergo conformational change during its intravascular metabolism.

Authors:  X Wang; R Pease; J Bertinato; R W Milne
Journal:  Arterioscler Thromb Vasc Biol       Date:  2000-05       Impact factor: 8.311

Review 3.  Structure of apolipoprotein B-100 in low density lipoproteins.

Authors:  J P Segrest; M K Jones; H De Loof; N Dashti
Journal:  J Lipid Res       Date:  2001-09       Impact factor: 5.922

4.  Modular structure of solubilized human apolipoprotein B-100. Low resolution model revealed by small angle neutron scattering.

Authors:  Alexander Johs; Michal Hammel; Ines Waldner; Roland P May; Peter Laggner; Ruth Prassl
Journal:  J Biol Chem       Date:  2006-05-16       Impact factor: 5.157

5.  Theoretical model of human apolipoprotein B100 tertiary structure.

Authors:  Anita Krisko; Catherine Etchebest
Journal:  Proteins       Date:  2007-02-01

6.  Dynamics of dense electronegative low density lipoproteins and their preferential association with lipoprotein phospholipase A(2).

Authors:  John W Gaubatz; Baiba K Gillard; John B Massey; Ron C Hoogeveen; Max Huang; Eric E Lloyd; Joe L Raya; Chao-Yuh Yang; Henry J Pownall
Journal:  J Lipid Res       Date:  2006-11-13       Impact factor: 5.922

Review 7.  Metabolic origins and clinical significance of LDL heterogeneity.

Authors:  Kaspar K Berneis; Ronald M Krauss
Journal:  J Lipid Res       Date:  2002-09       Impact factor: 5.922

8.  The epidermal growth factor homology domain of the LDL receptor drives lipoprotein release through an allosteric mechanism involving H190, H562, and H586.

Authors:  Zhenze Zhao; Peter Michaely
Journal:  J Biol Chem       Date:  2008-08-03       Impact factor: 5.157

9.  Molecular studies of pH-dependent ligand interactions with the low-density lipoprotein receptor.

Authors:  Taichi Yamamoto; Hsuan-Chih Chen; Emmanuel Guigard; Cyril M Kay; Robert O Ryan
Journal:  Biochemistry       Date:  2008-10-11       Impact factor: 3.162

10.  Mechanism of LDL binding and release probed by structure-based mutagenesis of the LDL receptor.

Authors:  Sha Huang; Lisa Henry; Yiu Kee Ho; Henry J Pownall; Gabby Rudenko
Journal:  J Lipid Res       Date:  2009-08-11       Impact factor: 5.922

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  39 in total

1.  Human low density lipoprotein: the mystery of core lipid packing.

Authors:  Ruth Prassl
Journal:  J Lipid Res       Date:  2010-12-03       Impact factor: 5.922

2.  Assessment of the validity of the double superhelix model for reconstituted high density lipoproteins: a combined computational-experimental approach.

Authors:  Martin K Jones; Lei Zhang; Andrea Catte; Ling Li; Michael N Oda; Gang Ren; Jere P Segrest
Journal:  J Biol Chem       Date:  2010-10-25       Impact factor: 5.157

Review 3.  Exploiting endocytosis for nanomedicines.

Authors:  Akin Akinc; Giuseppe Battaglia
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

4.  Human LDL core cholesterol ester packing: three-dimensional image reconstruction and SAXS simulation studies.

Authors:  Yuhang Liu; Dong Luo; David Atkinson
Journal:  J Lipid Res       Date:  2010-11-03       Impact factor: 5.922

5.  Structural basis of the lipid transfer mechanism of phospholipid transfer protein (PLTP).

Authors:  Meng Zhang; Xiaobo Zhai; Jinping Li; John J Albers; Simona Vuletic; Gang Ren
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-06-05       Impact factor: 4.698

6.  Preparation of Non-human Primate Brain Tissue for Pre-embedding Immunohistochemistry and Electron Microscopy.

Authors:  Lara Eid; Martin Parent
Journal:  J Vis Exp       Date:  2017-04-03       Impact factor: 1.355

7.  Identification of a novel lipid binding motif in apolipoprotein B by the analysis of hydrophobic cluster domains.

Authors:  Scott M Gordon; Mohsen Pourmousa; Maureen Sampson; Denis Sviridov; Rafique Islam; B Scott Perrin; Georgina Kemeh; Richard W Pastor; Alan T Remaley
Journal:  Biochim Biophys Acta Biomembr       Date:  2016-11-01       Impact factor: 3.747

8.  Effect of oxidation on the structure of human low- and high-density lipoproteins.

Authors:  Cristiano L P Oliveira; Priscila R Santos; Andrea M Monteiro; Antonio M Figueiredo Neto
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

Review 9.  Optimized negative-staining electron microscopy for lipoprotein studies.

Authors:  Lei Zhang; Huimin Tong; Mark Garewal; Gang Ren
Journal:  Biochim Biophys Acta       Date:  2012-09-29

10.  Recent progress in understanding protein and lipid factors affecting hepatic VLDL assembly and secretion.

Authors:  Meenakshi Sundaram; Zemin Yao
Journal:  Nutr Metab (Lond)       Date:  2010-04-27       Impact factor: 4.169

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