Literature DB >> 20080540

Widespread occurrence of nitrate storage and denitrification among Foraminifera and Gromiida.

Elisa Piña-Ochoa1, Signe Høgslund, Emmanuelle Geslin, Tomas Cedhagen, Niels Peter Revsbech, Lars Peter Nielsen, Magali Schweizer, Frans Jorissen, Søren Rysgaard, Nils Risgaard-Petersen.   

Abstract

Benthic foraminifers inhabit a wide range of aquatic environments including open marine, brackish, and freshwater environments. Here we show that several different and diverse foraminiferal groups (miliolids, rotaliids, textulariids) and Gromia, another taxon also belonging to Rhizaria, accumulate and respire nitrates through denitrification. The widespread occurrence among distantly related organisms suggests an ancient origin of the trait. The diverse metabolic capacity of these organisms, which enables them to respire with oxygen and nitrate and to sustain respiratory activity even when electron acceptors are absent from the environment, may be one of the reasons for their successful colonization of diverse marine sediment environments. The contribution of eukaryotes to the removal of fixed nitrogen by respiration may equal the importance of bacterial denitrification in ocean sediments.

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Year:  2009        PMID: 20080540      PMCID: PMC2824274          DOI: 10.1073/pnas.0908440107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

Review 2.  Methods for measuring denitrification: diverse approaches to a difficult problem.

Authors:  Peter M Groffman; Mark A Altabet; J K Böhlke; Klaus Butterbach-Bahl; Mark B David; Mary K Firestone; Anne E Giblin; Todd M Kana; Lars Peter Nielsen; Mary A Voytek
Journal:  Ecol Appl       Date:  2006-12       Impact factor: 4.657

3.  Growth yields in bacterial denitrification and nitrate ammonification.

Authors:  Tobin O Strohm; Ben Griffin; Walter G Zumft; Bernhard Schink
Journal:  Appl Environ Microbiol       Date:  2007-01-05       Impact factor: 4.792

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  Nanogram nitrite and nitrate determination in environmental and biological materials by vanadium (III) reduction with chemiluminescence detection.

Authors:  R S Braman; S A Hendrix
Journal:  Anal Chem       Date:  1989-12-15       Impact factor: 6.986

6.  Evidence for complete denitrification in a benthic foraminifer.

Authors:  Nils Risgaard-Petersen; Alexandra M Langezaal; Signe Ingvardsen; Markus C Schmid; Mike S M Jetten; Huub J M Op den Camp; Jan W M Derksen; Elisa Piña-Ochoa; Susanne P Eriksson; Lars Peter Nielsen; Niels Peter Revsbech; Tomas Cedhagen; Gijsbert J van der Zwaan
Journal:  Nature       Date:  2006-09-07       Impact factor: 49.962

7.  Eukaryotic nirK genes encoding copper-containing nitrite reductase: originating from the protomitochondrion?

Authors:  Sang-Wan Kim; Shinya Fushinobu; Shengmin Zhou; Takayoshi Wakagi; Hirofumi Shoun
Journal:  Appl Environ Microbiol       Date:  2009-03-06       Impact factor: 4.792

8.  The evolution of early Foraminifera.

Authors:  Jan Pawlowski; Maria Holzmann; Cédric Berney; José Fahrni; Andrew J Gooday; Tomas Cedhagen; Andrea Habura; Samuel S Bowser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-22       Impact factor: 11.205

Review 9.  Denitrifying genes in bacterial and Archaeal genomes.

Authors:  Laurent Philippot
Journal:  Biochim Biophys Acta       Date:  2002-09-27

10.  Dating of the human-ape splitting by a molecular clock of mitochondrial DNA.

Authors:  M Hasegawa; H Kishino; T Yano
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

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  40 in total

Review 1.  Biochemistry and evolution of anaerobic energy metabolism in eukaryotes.

Authors:  Miklós Müller; Marek Mentel; Jaap J van Hellemond; Katrin Henze; Christian Woehle; Sven B Gould; Re-Young Yu; Mark van der Giezen; Aloysius G M Tielens; William F Martin
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

Review 2.  Intermediary metabolism in protists: a sequence-based view of facultative anaerobic metabolism in evolutionarily diverse eukaryotes.

Authors:  Michael L Ginger; Lillian K Fritz-Laylin; Chandler Fulton; W Zacheus Cande; Scott C Dawson
Journal:  Protist       Date:  2010-10-30

Review 3.  The chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms.

Authors:  Daniel J G Lahr; Laura Wegener Parfrey; Edward A D Mitchell; Laura A Katz; Enrique Lara
Journal:  Proc Biol Sci       Date:  2011-03-23       Impact factor: 5.349

4.  Denitrification likely catalyzed by endobionts in an allogromiid foraminifer.

Authors:  Joan M Bernhard; Virginia P Edgcomb; Karen L Casciotti; Matthew R McIlvin; David J Beaudoin
Journal:  ISME J       Date:  2011-12-01       Impact factor: 10.302

5.  Diatoms respire nitrate to survive dark and anoxic conditions.

Authors:  Anja Kamp; Dirk de Beer; Jana L Nitsch; Gaute Lavik; Peter Stief
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

6.  Metabolic preference of nitrate over oxygen as an electron acceptor in foraminifera from the Peruvian oxygen minimum zone.

Authors:  Nicolaas Glock; Alexandra-Sophie Roy; Dennis Romero; Tanita Wein; Julia Weissenbach; Niels Peter Revsbech; Signe Høgslund; David Clemens; Stefan Sommer; Tal Dagan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-06       Impact factor: 11.205

Review 7.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

8.  Anaerobic animals from an ancient, anoxic ecological niche.

Authors:  Marek Mentel; William Martin
Journal:  BMC Biol       Date:  2010-04-06       Impact factor: 7.431

9.  Anaerobic metazoans: no longer an oxymoron.

Authors:  Lisa A Levin
Journal:  BMC Biol       Date:  2010-04-06       Impact factor: 7.431

10.  Denitrifier community in the oxygen minimum zone of a subtropical deep reservoir.

Authors:  Zheng Yu; Jun Yang; Lemian Liu
Journal:  PLoS One       Date:  2014-03-24       Impact factor: 3.240

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