Literature DB >> 20080055

'Omics' analyses of regulatory networks in plant abiotic stress responses.

Kaoru Urano1, Yukio Kurihara, Motoaki Seki, Kazuo Shinozaki.   

Abstract

Plants must respond and adapt to abiotic stresses to survive in various environmental conditions. Plants have acquired various stress tolerance mechanisms, which are different processes involving physiological and biochemical changes that result in adaptive or morphological changes. Recent advances in genome-wide analyses have revealed complex regulatory networks that control global gene expression, protein modification, and metabolite composition. Genetic regulation and epigenetic regulation, including changes in nucleosome distribution, histone modification, DNA methylation, and npcRNAs (non-protein-coding RNA) play important roles in abiotic stress gene networks. Transcriptomics, metabolomics, bioinformatics, and high-through-put DNA sequencing have enabled active analyses of regulatory networks that control abiotic stress responses. Such analyses have markedly increased our understanding of global plant systems in responses and adaptation to stress conditions.

Mesh:

Year:  2010        PMID: 20080055     DOI: 10.1016/j.pbi.2009.12.006

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  123 in total

Review 1.  Control of Arabidopsis root development.

Authors:  Jalean J Petricka; Cara M Winter; Philip N Benfey
Journal:  Annu Rev Plant Biol       Date:  2012-02-09       Impact factor: 26.379

Review 2.  Integration of metabolic reactions and gene regulation.

Authors:  Chen-Hsiang Yeang
Journal:  Mol Biotechnol       Date:  2011-01       Impact factor: 2.695

Review 3.  WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plants.

Authors:  Parinita Agarwal; M P Reddy; Jitendra Chikara
Journal:  Mol Biol Rep       Date:  2010-11-25       Impact factor: 2.316

4.  Apoplastic reactive oxygen species transiently decrease auxin signaling and cause stress-induced morphogenic response in Arabidopsis.

Authors:  Tiina Blomster; Jarkko Salojärvi; Nina Sipari; Mikael Brosché; Reetta Ahlfors; Markku Keinänen; Kirk Overmyer; Jaakko Kangasjärvi
Journal:  Plant Physiol       Date:  2011-10-17       Impact factor: 8.340

5.  Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.

Authors:  Zhao Su; Xuan Ma; Huihong Guo; Noor Liyana Sukiran; Bin Guo; Sarah M Assmann; Hong Ma
Journal:  Plant Cell       Date:  2013-10-31       Impact factor: 11.277

6.  Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.

Authors:  Chuang Ma; Mingming Xin; Kenneth A Feldmann; Xiangfeng Wang
Journal:  Plant Cell       Date:  2014-02-11       Impact factor: 11.277

7.  Phosphoproteomic Analyses Reveal Early Signaling Events in the Osmotic Stress Response.

Authors:  Kelly E Stecker; Benjamin B Minkoff; Michael R Sussman
Journal:  Plant Physiol       Date:  2014-05-07       Impact factor: 8.340

8.  Analysis of biochemical variations and microRNA expression in wild ( Ipomoea campanulata ) and cultivated ( Jacquemontia pentantha ) species exposed to in vivo water stress.

Authors:  Vallabhi Ghorecha; Ketan Patel; S Ingle; Ramanjulu Sunkar; N S R Krishnayya
Journal:  Physiol Mol Biol Plants       Date:  2013-10-19

Review 9.  HD2-type histone deacetylases: unique regulators of plant development and stress responses.

Authors:  Muhammad Sufyan Tahir; Lining Tian
Journal:  Plant Cell Rep       Date:  2021-05-26       Impact factor: 4.570

10.  Extending MapMan Ontology to Tobacco for Visualization of Gene Expression.

Authors:  Maurice Ht Ling; Roel C Rabara; Prateek Tripathi; Paul J Rushton; Steven X Ge
Journal:  Dataset Pap Biol       Date:  2013
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