Literature DB >> 20078127

Energetics of nucleotide-induced DnaK conformational states.

Stefka G Taneva1, Fernando Moro, Adrián Velázquez-Campoy, Arturo Muga.   

Abstract

Hsp70 chaperones are molecular switches that use the free energy of ATP binding and hydrolysis to modulate their affinity for protein substrates and, most likely, to remodel non-native interactions allowing proper substrate folding. By means of isothermal titration calorimetry, we have measured the thermodynamics of ATP and ADP binding to (i) wild-type DnaK, the main bacterial Hsp70; (ii) two single-point mutants, DnaK(T199A), which lacks ATPase activity but maintains conformational changes similar to those observed in the wild-type protein, and DnaK(R151A), defective in interdomain communication; and iii) two deletion mutants, the isolated nucleotide binding domain (K-NBD) and a DeltaLid construct [DnaK(1-507)]. At 25 degrees C, ATP binding to DnaK results in a fast endothermic and a slow exothermic process due to ATP hydrolysis. We demonstrate that the endothermic event is due to the allosteric coupling between ATP binding to the nucleotide binding domain and the conformational rearrangement of the substrate binding domain. The interpretation of our data is compatible with domain docking upon ATP binding and shows that this conformational change carries an energy penalty of ca. 1 kcal/mol. The conformational energy stored in the ATP-bound DnaK state, together with the free energy of ATP hydrolysis, can be used in remodeling bound substrates.

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Year:  2010        PMID: 20078127     DOI: 10.1021/bi901847q

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  Allosteric communication between the nucleotide binding domains of caseinolytic peptidase B.

Authors:  José Ángel Fernández-Higuero; Sergio P Acebrón; Stefka G Taneva; Urko Del Castillo; Fernando Moro; Arturo Muga
Journal:  J Biol Chem       Date:  2011-06-03       Impact factor: 5.157

2.  Allosteric signal transmission in the nucleotide-binding domain of 70-kDa heat shock protein (Hsp70) molecular chaperones.

Authors:  Anastasia Zhuravleva; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

3.  Substrate-binding domain conformational dynamics mediate Hsp70 allostery.

Authors:  Anastasia Zhuravleva; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

4.  Crowding activates ClpB and enhances its association with DnaK for efficient protein aggregate reactivation.

Authors:  Ianire Martín; Garbiñe Celaya; Carlos Alfonso; Fernando Moro; Germán Rivas; Arturo Muga
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

5.  Modulation of the chaperone DnaK allosterism by the nucleotide exchange factor GrpE.

Authors:  Roberto Melero; Fernando Moro; María Ángeles Pérez-Calvo; Judit Perales-Calvo; Lucía Quintana-Gallardo; Oscar Llorca; Arturo Muga; José María Valpuesta
Journal:  J Biol Chem       Date:  2015-03-04       Impact factor: 5.157

6.  An allosteric inhibitor of bacterial Hsp70 chaperone potentiates antibiotics and mitigates resistance.

Authors:  Jordan Hosfelt; Aweon Richards; Meng Zheng; Carolina Adura; Brock Nelson; Amy Yang; Allison Fay; William Resager; Beatrix Ueberheide; J Fraser Glickman; Tania J Lupoli
Journal:  Cell Chem Biol       Date:  2021-11-23       Impact factor: 9.039

7.  Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.

Authors:  Gabrielle Stetz; Gennady M Verkhivker
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

8.  Specialized Hsp70 chaperone (HscA) binds preferentially to the disordered form, whereas J-protein (HscB) binds preferentially to the structured form of the iron-sulfur cluster scaffold protein (IscU).

Authors:  Jin Hae Kim; Marco Tonelli; Ronnie O Frederick; Darius C-F Chow; John L Markley
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

9.  Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

Authors:  Lars Skjaerven; Barry Grant; Arturo Muga; Knut Teigen; J Andrew McCammon; Nathalie Reuter; Aurora Martinez
Journal:  PLoS Comput Biol       Date:  2011-03-10       Impact factor: 4.475

10.  Isothermal titration calorimetry for measuring macromolecule-ligand affinity.

Authors:  Michael R Duff; Jordan Grubbs; Elizabeth E Howell
Journal:  J Vis Exp       Date:  2011-09-07       Impact factor: 1.355

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