Literature DB >> 20077409

Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports.

Salvador Martínez-Bartolomé1, J Alberto Medina-Aunon, Andrew R Jones, Juan P Albar.   

Abstract

The Human Proteome Organization's Proteomics Standards Initiative aims to develop new standards for data representation and exchange. The Proteomics Standards Initiative has defined the Minimum Information About a Proteomics Experiment (MIAPE) guidelines that specify the information that should be reported with a published experiment. With the aim of promoting the implementation of standard reporting guidelines, we have developed a web tool that helps to generate and store MIAPE compliant reports describing gel electrophoresis and MS-based experiments. The tool can be used in the reviewing phase of the proteomics publication process and can facilitate data interpretation through the comparison of related studies.

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Year:  2010        PMID: 20077409     DOI: 10.1002/pmic.200900367

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  4 in total

1.  The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative.

Authors:  Frank Gibson; Christine Hoogland; Salvador Martinez-Bartolomé; J Alberto Medina-Aunon; Juan Pablo Albar; Gyorgy Babnigg; Anil Wipat; Henning Hermjakob; Jonas S Almeida; Romesh Stanislaus; Norman W Paton; Andrew R Jones
Journal:  Proteomics       Date:  2010-09       Impact factor: 3.984

2.  The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards.

Authors:  J Alberto Medina-Aunon; Salvador Martínez-Bartolomé; Miguel A López-García; Emilio Salazar; Rosana Navajas; Andrew R Jones; Alberto Paradela; Juan P Albar
Journal:  Mol Cell Proteomics       Date:  2011-10       Impact factor: 5.911

3.  Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany.

Authors:  Sandra Orchard; Juan Pablo Albar; Eric W Deutsch; Martin Eisenacher; Juan A Vizcaíno; Henning Hermjakob
Journal:  Proteomics       Date:  2011-11       Impact factor: 3.984

4.  A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics.

Authors:  Jenna Kenyani; J Alberto Medina-Aunon; Salvador Martinez-Bartolomé; Juan-Pablo Albar; Jonathan M Wastling; Andrew R Jones
Journal:  BMC Res Notes       Date:  2011-03-28
  4 in total

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