Literature DB >> 20067302

Structural studies of bacterioferritin B from Pseudomonas aeruginosa suggest a gating mechanism for iron uptake via the ferroxidase center .

Saroja K Weeratunga1, Scott Lovell, Huili Yao, Kevin P Battaile, Christopher J Fischer, Casey E Gee, Mario Rivera.   

Abstract

The structure of recombinant pan class="Species">Pseudomonas aeruginosa bacterioferritin B (Pa BfrB) has been determined from crystals grown from protein devoid of core mineral iron (as-isolated) and from protein mineralized with approximately 600 iron atoms (mineralized). Structures were also obtained from crystals grown from mineralized BfrB after they had been soaked in an FeSO(4) solution (Fe soak) and in separate experiments after they had been soaked in an FeSO(4) solution followed by a soak in a crystallization solution (double soak). Although the structures consist of a typical bacterioferritin fold comprised of a nearly spherical 24-mer assembly that binds 12 heme molecules, comparison of microenvironments observed in the distinct structures provided interesting insights. The ferroxidase center in the as-isolated, mineralized, and double-soak structures is empty. The ferroxidase ligands (except His130) are poised to bind iron with minimal conformational changes. The His130 side chain, on the other hand, must rotate toward the ferroxidase center to coordinate iron. In comparison, the structure obtained from crystals soaked in an FeSO(4) solution displays a fully occupied ferroxidase center and iron bound to the internal, Fe((in)), and external, Fe((out)), surfaces of Pa BfrB. The conformation of His130 in this structure is rotated toward the ferroxidase center and coordinates an iron ion. The structures also revealed a pore on the surface of Pa BfrB that likely serves as a port of entry for Fe(2+) to the ferroxidase center. On its opposite end, the pore is capped by the side chain of His130 when it adopts its "gate-closed" conformation that enables coordination to a ferroxidase iron. A change to its "gate-open", noncoordinative conformation creates a path for the translocation of iron from the ferroxidase center to the interior cavity. These structural observations, together with findings obtained from iron incorporation measurements in solution, suggest that the ferroxidase pore is the dominant entry route for the uptake of iron by Pa BfrB. These findings, which are clearly distinct from those made with Escherichia coli Bfr [Crow, A. C., Lawson, T. L., Lewin, A., Moore, G. R., and Le Brun, N. E. (2009) J. Am. Chem. Soc. 131, 6808-6813], indicate that not all bacterioferritins operate in the same manner.

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Year:  2010        PMID: 20067302      PMCID: PMC2852880          DOI: 10.1021/bi9015204

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

1.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

2.  The 2.6 A resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'.

Authors:  D Cobessi; L S Huang; M Ban; N G Pon; F Daldal; E A Berry
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-12-21

3.  "Opening" the ferritin pore for iron release by mutation of conserved amino acids at interhelix and loop sites.

Authors:  W Jin; H Takagi; B Pancorbo; E C Theil
Journal:  Biochemistry       Date:  2001-06-26       Impact factor: 3.162

4.  The nature of the di-iron site in the bacterioferritin from Desulfovibrio desulfuricans.

Authors:  Sofia Macedo; Célia V Romão; Edward Mitchell; Pedro M Matias; Ming Y Liu; António V Xavier; Jean LeGall; Miguel Teixeira; Peter Lindley; Maria A Carrondo
Journal:  Nat Struct Biol       Date:  2003-04

5.  Multiple pathways for mineral core formation in mammalian apoferritin. The role of hydrogen peroxide.

Authors:  Guanghua Zhao; Fadi Bou-Abdallah; Paolo Arosio; Sonia Levi; Christine Janus-Chandler; N Dennis Chasteen
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

6.  The iron oxidation and hydrolysis chemistry of Escherichia coli bacterioferritin.

Authors:  X Yang; N E Le Brun; A J Thomson; G R Moore; N D Chasteen
Journal:  Biochemistry       Date:  2000-04-25       Impact factor: 3.162

7.  Transcriptome analysis of the Pseudomonas aeruginosa response to iron.

Authors:  Marco Palma; Stefan Worgall; Luis E N Quadri
Journal:  Arch Microbiol       Date:  2003-09-26       Impact factor: 2.552

8.  GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes.

Authors:  Urs A Ochsner; Paula J Wilderman; Adriana I Vasil; Michael L Vasil
Journal:  Mol Microbiol       Date:  2002-09       Impact factor: 3.501

Review 9.  Ferritins, iron uptake and storage from the bacterioferritin viewpoint.

Authors:  Maria Arménia Carrondo
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

10.  Core formation in Escherichia coli bacterioferritin requires a functional ferroxidase center.

Authors:  Suzanne Baaghil; Allison Lewin; Geoffrey R Moore; Nick E Le Brun
Journal:  Biochemistry       Date:  2003-12-02       Impact factor: 3.162

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  27 in total

1.  Local packing modulates diversity of iron pathways and cooperative behavior in eukaryotic and prokaryotic ferritins.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser; Mario Rivera
Journal:  J Chem Phys       Date:  2014-03-21       Impact factor: 3.488

2.  Concerted motions networking pores and distant ferroxidase centers enable bacterioferritin function and iron traffic.

Authors:  Huili Yao; Huan Rui; Ritesh Kumar; Kate Eshelman; Scott Lovell; Kevin P Battaile; Wonpil Im; Mario Rivera
Journal:  Biochemistry       Date:  2015-02-17       Impact factor: 3.162

Review 3.  Bacterial iron detoxification at the molecular level.

Authors:  Justin M Bradley; Dimitri A Svistunenko; Michael T Wilson; Andrew M Hemmings; Geoffrey R Moore; Nick E Le Brun
Journal:  J Biol Chem       Date:  2020-10-12       Impact factor: 5.157

4.  Benchmarking a computational design method for the incorporation of metal ion-binding sites at symmetric protein interfaces.

Authors:  William A Hansen; Sagar D Khare
Journal:  Protein Sci       Date:  2017-05-31       Impact factor: 6.725

5.  Inhibiting the BfrB:Bfd interaction in Pseudomonas aeruginosa causes irreversible iron accumulation in bacterioferritin and iron deficiency in the bacterial cytosol.

Authors:  Kate Eshelman; Huili Yao; Achala N D Punchi Hewage; Jacqueline J Deay; Josephine R Chandler; Mario Rivera
Journal:  Metallomics       Date:  2017-06-21       Impact factor: 4.526

6.  Structural insights into the ferroxidase site of ferritins from higher eukaryotes.

Authors:  Ivano Bertini; Daniela Lalli; Stefano Mangani; Cecilia Pozzi; Camilla Rosa; Elizabeth C Theil; Paola Turano
Journal:  J Am Chem Soc       Date:  2012-03-28       Impact factor: 15.419

7.  The structure of the BfrB-Bfd complex reveals protein-protein interactions enabling iron release from bacterioferritin.

Authors:  Huili Yao; Yan Wang; Scott Lovell; Ritesh Kumar; Anatoly M Ruvinsky; Kevin P Battaile; Ilya A Vakser; Mario Rivera
Journal:  J Am Chem Soc       Date:  2012-08-01       Impact factor: 15.419

Review 8.  Mechanisms of iron mineralization in ferritins: one size does not fit all.

Authors:  Justin M Bradley; Geoffrey R Moore; Nick E Le Brun
Journal:  J Biol Inorg Chem       Date:  2014-04-19       Impact factor: 3.358

9.  Two distinct ferritin-like molecules in Pseudomonas aeruginosa: the product of the bfrA gene is a bacterial ferritin (FtnA) and not a bacterioferritin (Bfr).

Authors:  Huili Yao; Grace Jepkorir; Scott Lovell; Pavithra V Nama; Saroja Weeratunga; Kevin P Battaile; Mario Rivera
Journal:  Biochemistry       Date:  2011-05-20       Impact factor: 3.162

10.  The catalytic center of ferritin regulates iron storage via Fe(II)-Fe(III) displacement.

Authors:  Kourosh Honarmand Ebrahimi; Eckhard Bill; Peter-Leon Hagedoorn; Wilfred R Hagen
Journal:  Nat Chem Biol       Date:  2012-09-23       Impact factor: 15.040

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